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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0494300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : von Willebrand factor, type A domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0416) R2 : 0.0867
β1 : -0.356 (0.152) R2dD : 0.0105 R2D : 0.00489
β2 : -- (--) R2dC : -- R2C : --
β3 : 8.65 (1.53) R2dE : 0.264 R2E : -0.216
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -30 (5.14) R2dD*E : 0.288 R2D*E : -0.185
γ1 : -0.0848 (0.0888) R2dN8 : 0.00263 R2N8 : 0.00169
σ : 0.778
deviance : 278.77
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8134
memory length : 87
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0167
open length of G : 0.967

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
271.24 0.774 3.05 -0.321 0.343 7.87 -0.55 -27.7 -0.0826 13.5 0.9882 87 0.0219 1.02
309.1 0.819 2.96 -0.00182 0.287 4.86 -0.677 -- 0.0404 12.3 0.7117 67 0.096 1.28
272.25 0.768 3.05 -0.299 0.336 8.42 -- -28.5 -0.0768 13.5 0.9074 86 0.0333 1.01
300.56 0.807 3.03 -0.0304 0.264 4.02 -- -- 0.0808 11.6 0.9189 68 0.115 1.28
278.77 0.778 3.04 -0.356 -- 8.65 -- -30 -0.0848 -- 0.8134 87 0.0167 0.967
296.47 0.807 3.04 -0.291 0.289 -- -0.322 -- -0.111 13.3 -- -- -- --
296.9 0.807 3.04 -0.302 0.29 -- -- -- -0.112 13.4 -- -- -- --
301.94 0.809 2.99 -0.179 -- 3.03 -- -- 0.0864 -- 0.828 69 0.0954 1.3
290.37 0.794 3.01 -- 0.418 2.08 -- -- -0.0582 13.5 1.138 67 0.1 1.35
302.08 0.812 3.04 -0.313 -- -- -- -- -0.118 -- -- -- -- --
299.3 0.809 3.03 -- 0.295 -- -- -- -0.0786 13.4 -- -- -- --
281.07 0.781 3.02 -- -- 3.91 -- -- -0.0144 -- 0.8201 51 0.083 1.08
304.68 0.815 3.03 -- -- -- -- -- -0.0835 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 271.63 atmosphere 1000.0 10 < th dose independent rect. 8 2
3 271.64 atmosphere 1000.0 90 < th dose independent rect. 8 1
15 271.94 wind 1.0 90 < th dose dependent rect. 24 1
16 271.95 atmosphere 1000.0 10 < th dose independent rect. 6 5
18 271.97 atmosphere 1000.0 270 < th dose independent rect. 6 1
38 272.86 atmosphere 1000.0 10 < th dose independent rect. 2 9
46 273.08 atmosphere 1000.0 90 < th dose dependent rect. 9 1
76 274.22 atmosphere 1000.0 30 < th dose dependent rect. 6 5
80 274.39 atmosphere 1000.0 270 < th dose dependent rect. 6 1
94 275.45 wind 1.0 90 < th dose independent rect. 24 1
168 279.53 radiation 10.0 10 < th dose dependent rect. 12 1
175 279.97 radiation 10.0 10 < th dose independent rect. 12 1
185 280.37 atmosphere 1000.0 720 < th dose dependent rect. 22 4
193 280.60 temperature 25.0 270 < th dose independent rect. 11 1
213 281.26 atmosphere 1005.0 30 < th dose dependent rect. 1 1
223 281.50 temperature 25.0 270 < th dose dependent rect. 11 1
228 281.62 temperature 25.0 90 < th dose independent rect. 11 4
235 281.97 temperature 25.0 10 < th dose dependent rect. 12 1
239 282.26 temperature 25.0 90 < th dose independent rect. 10 6
247 282.44 temperature 30.0 10 < th dose dependent rect. 10 6
256 282.61 temperature 25.0 10 < th dose dependent rect. 11 3
257 282.66 atmosphere 1000.0 720 < th dose independent rect. 22 4
259 282.71 atmosphere 1000.0 720 < th dose independent rect. 23 2
264 282.81 temperature 30.0 270 < th dose dependent rect. 9 5
298 283.35 wind 1.0 90 < th dose independent rect. 14 12
307 283.50 radiation 10.0 90 < th dose dependent rect. 8 4
321 283.80 humidity 80.0 90 > th dose dependent rect. 14 1
331 283.93 wind 1.0 90 < th dose independent rect. 10 16
336 283.96 temperature 25.0 1440 < th dose independent rect. 4 2
340 284.03 temperature 25.0 720 > th dose independent rect. 4 2
351 284.21 temperature 25.0 270 < th dose independent rect. 8 6
352 284.24 humidity 90.0 90 > th dose dependent rect. 24 1
353 284.25 radiation 10.0 90 < th dose dependent rect. 14 1
378 284.63 temperature 25.0 90 > th dose dependent rect. 4 2
382 284.68 temperature 20.0 270 < th dose independent rect. 8 1
392 284.76 radiation 1.0 720 < th dose independent rect. 14 1
393 284.76 radiation 1.0 720 < th dose dependent rect. 14 1
403 284.86 wind 5.0 90 > th dose dependent rect. 13 1
410 284.94 temperature 25.0 720 > th dose independent rect. 24 7
416 284.98 atmosphere 1000.0 720 > th dose independent rect. 19 7
428 285.08 wind 5.0 90 > th dose independent rect. 13 1
431 285.12 humidity 50.0 720 > th dose independent rect. 4 8
464 285.39 atmosphere 995.0 720 > th dose independent rect. 24 16
470 285.43 temperature 25.0 10 > th dose dependent rect. 2 5
472 285.45 atmosphere 1000.0 720 < th dose independent rect. 1 1
479 285.49 atmosphere 995.0 720 > th dose independent rect. 16 8
502 285.68 temperature 25.0 10 < th dose independent rect. 12 1
504 285.70 temperature 10.0 720 > th dose independent rect. 16 8
505 285.70 radiation 40.0 720 < th dose independent rect. 16 8
506 285.70 temperature 10.0 720 > th dose independent rect. 24 16
508 285.71 atmosphere 995.0 720 > th dose independent rect. 12 16
517 285.75 temperature 30.0 720 < th dose independent rect. 4 8
528 285.83 radiation 10.0 90 < th dose independent rect. 8 4
529 285.83 atmosphere 1000.0 720 > th dose independent rect. 4 8
545 285.93 temperature 25.0 1440 < th dose independent rect. 1 6
562 286.00 atmosphere 1010.0 30 < th dose dependent rect. 6 1
563 286.01 radiation 40.0 10 > th dose dependent rect. 9 1
585 286.02 temperature 10.0 720 > th dose independent rect. 4 8
587 286.02 atmosphere 1015.0 720 < th dose independent rect. 4 8
588 286.02 temperature 10.0 720 > th dose independent rect. 12 16
618 286.18 wind 3.0 30 > th dose independent rect. 6 1
619 286.18 atmosphere 1010.0 30 < th dose independent rect. 6 1
621 286.20 atmosphere 1005.0 10 < th dose independent rect. 15 1
639 286.33 precipitation 0.1 720 < th dose independent rect. 12 16
641 286.33 precipitation 0.1 720 < th dose dependent rect. 12 16
648 286.37 radiation 10.0 30 < th dose independent rect. 6 1
654 286.39 wind 1.0 90 < th dose independent rect. 17 9
683 286.58 wind 1.0 1440 < th dose dependent rect. 10 1
687 286.62 precipitation 0.1 720 < th dose independent rect. 16 8
690 286.62 precipitation 0.1 720 < th dose dependent rect. 16 8
695 286.71 radiation 1.0 1440 < th dose dependent rect. 3 2
701 286.74 humidity 50.0 720 > th dose independent rect. 16 8
714 286.82 atmosphere 1000.0 10 < th dose independent rect. 22 13
717 286.84 temperature 20.0 30 > th dose independent rect. 1 1
724 286.85 temperature 20.0 720 < th dose dependent rect. 5 1
731 286.86 wind 1.0 90 < th dose dependent rect. 14 12
768 286.96 temperature 20.0 720 > th dose independent rect. 7 2
776 286.98 atmosphere 1000.0 90 < th dose independent rect. 19 15
781 286.99 wind 9.0 720 < th dose independent rect. 4 8
799 287.06 atmosphere 995.0 30 > th dose dependent rect. 11 5
805 287.13 atmosphere 1005.0 30 > th dose independent rect. 11 1
837 287.27 wind 3.0 10 < th dose dependent rect. 15 1
848 287.29 radiation 1.0 1440 < th dose dependent rect. 20 9
852 287.32 radiation 1.0 1440 < th dose dependent rect. 24 5
853 287.33 atmosphere 1000.0 270 < th dose independent sin 7 NA
856 287.35 atmosphere 1010.0 270 > th dose independent rect. 8 1
860 287.35 temperature 20.0 720 < th dose dependent rect. 3 4
869 287.37 precipitation 0.1 720 < th dose independent rect. 4 8
871 287.37 precipitation 0.1 720 < th dose dependent rect. 4 8
878 287.40 atmosphere 1000.0 30 > th dose independent rect. 11 5
892 287.46 atmosphere 1010.0 270 < th dose independent rect. 1 10
928 287.54 temperature 15.0 720 > th dose dependent rect. 2 2
936 287.57 temperature 10.0 720 > th dose dependent rect. 2 9
953 287.65 temperature 25.0 10 > th dose dependent rect. 22 9
964 287.69 temperature 25.0 720 < th dose dependent rect. 24 12
972 287.72 humidity 90.0 90 > th dose independent rect. 24 1
984 287.76 atmosphere 1000.0 30 > th dose dependent rect. 11 1
992 287.79 atmosphere 1015.0 1440 < th dose independent rect. 13 1
995 287.81 temperature 25.0 1440 < th dose independent rect. 11 6
999 287.83 temperature 25.0 1440 < th dose independent rect. 11 4