Os06g0608800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : von Willebrand factor, type A domain containing protein.
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Os06g0608800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : von Willebrand factor, type A domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.3 | 0.41 | 11.1 | 0.26 | 1.41 | -0.481 | 0.796 | 1.16 | 0.637 | 19.3 | 10.06 | 1351 | -- | -- |
| 78.52 | 0.413 | 11.1 | 0.131 | 1.4 | -0.49 | 0.925 | -- | 0.593 | 19.4 | 10.24 | 1344 | -- | -- |
| 77.88 | 0.411 | 11 | 0.254 | 1.44 | -0.507 | -- | 1.53 | 0.664 | 19.3 | 10.05 | 1257 | -- | -- |
| 80.56 | 0.418 | 11.1 | 0.102 | 1.4 | -0.449 | -- | -- | 0.575 | 19.3 | 12.32 | 1363 | -- | -- |
| 174.49 | 0.619 | 11.1 | -0.0764 | -- | -0.352 | -- | 0.00383 | 0.404 | -- | 10.05 | 1257 | -- | -- |
| 83.9 | 0.429 | 11.1 | -0.0564 | 1.38 | -- | 0.873 | -- | 0.437 | 19.1 | -- | -- | -- | -- |
| 85.91 | 0.434 | 11.1 | -0.0738 | 1.38 | -- | -- | -- | 0.439 | 19.1 | -- | -- | -- | -- |
| 101.98 | 0.47 | 11.1 | -0.568 | -- | 1.77 | -- | -- | 0.489 | -- | 0.009998 | 872 | -- | -- |
| 80.51 | 0.418 | 11.1 | -- | 1.39 | -0.419 | -- | -- | 0.566 | 19.3 | 12.32 | 1363 | -- | -- |
| 186.9 | 0.639 | 11.1 | -0.1 | -- | -- | -- | -- | 0.415 | -- | -- | -- | -- | -- |
| 86.06 | 0.434 | 11.1 | -- | 1.38 | -- | -- | -- | 0.448 | 19.1 | -- | -- | -- | -- |
| 99.76 | 0.465 | 11.1 | -- | -- | 1.79 | -- | -- | 0.408 | -- | 0.09 | 861 | -- | -- |
| 187.16 | 0.639 | 11.1 | -- | -- | -- | -- | -- | 0.426 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.65 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 15 | 73.80 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 5 |
| 20 | 73.94 | radiation | 10 | 10 | < th | dose dependent | rect. | 6 | 11 |
| 22 | 74.05 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 29 | 74.26 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 2 |
| 32 | 74.29 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 9 |
| 40 | 74.41 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 50 | 74.54 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 3 |
| 55 | 74.56 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 57 | 74.59 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 63 | 74.72 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 70 | 74.78 | humidity | 50 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 84 | 74.95 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 93 | 75.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 99 | 75.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 106 | 75.18 | humidity | 50 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 107 | 75.19 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 112 | 75.23 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 120 | 75.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 123 | 75.37 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 18 |
| 124 | 75.38 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 130 | 75.42 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 135 | 75.46 | radiation | 10 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 141 | 75.49 | radiation | 20 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 144 | 75.51 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 20 |
| 157 | 75.55 | temperature | 20 | 720 | < th | dose dependent | rect. | 22 | 7 |
| 172 | 75.66 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 173 | 75.68 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 189 | 75.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 199 | 75.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 210 | 75.81 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 212 | 75.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 213 | 75.83 | radiation | 30 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 216 | 75.84 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 238 | 75.92 | humidity | 70 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 248 | 75.92 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 253 | 75.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 259 | 75.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 306 | 76.15 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 316 | 76.15 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 15 |
| 317 | 76.15 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 327 | 76.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 330 | 76.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 346 | 76.20 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 364 | 76.25 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 370 | 76.27 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 377 | 76.30 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 379 | 76.30 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 381 | 76.30 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 436 | 76.30 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 438 | 76.30 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 512 | 76.39 | humidity | 50 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 521 | 76.41 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 547 | 76.47 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 17 |
| 571 | 76.54 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 592 | 76.56 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 18 |
| 657 | 76.70 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 693 | 76.76 | radiation | 10 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 696 | 76.77 | radiation | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 717 | 76.81 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 722 | 76.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 747 | 76.84 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 16 |
| 750 | 76.85 | humidity | 50 | 10 | > th | dose dependent | sin | 4 | NA |
| 758 | 76.87 | radiation | 10 | 1440 | > th | dose independent | sin | 3 | NA |
| 796 | 76.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 797 | 76.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 808 | 76.92 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 12 |
| 812 | 76.92 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 814 | 76.92 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 818 | 76.93 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 824 | 76.94 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 861 | 76.99 | humidity | 80 | 10 | > th | dose independent | sin | 2 | NA |
| 869 | 77.00 | humidity | 80 | 1440 | > th | dose independent | sin | 5 | NA |
| 871 | 77.00 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 874 | 77.01 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 875 | 77.01 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 891 | 77.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 897 | 77.03 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 912 | 77.04 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 15 |
| 914 | 77.05 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 925 | 77.06 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 930 | 77.06 | temperature | 25 | 30 | > th | dose independent | rect. | 18 | 12 |
| 943 | 77.07 | radiation | 30 | 90 | < th | dose independent | rect. | 23 | 10 |
| 959 | 77.08 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 12 |
| 965 | 77.08 | radiation | 20 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 971 | 77.09 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 974 | 77.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 982 | 77.10 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 993 | 77.11 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 11 |