Os08g0135400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : von Willebrand factor, type A domain containing protein.
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Os08g0135400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : von Willebrand factor, type A domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.18 | 0.262 | 9.85 | -1.21 | 0.713 | 0.394 | 0.975 | 1.24 | 0.273 | 19.5 | 70 | 688 | -- | -- |
| 32.66 | 0.266 | 9.84 | -1.16 | 0.681 | 0.386 | 0.488 | -- | 0.286 | 19.6 | 69.37 | 698 | -- | -- |
| 31.76 | 0.262 | 9.84 | -1.25 | 0.478 | 0.219 | -- | 0.914 | 0.275 | 19.8 | 70.71 | 1459 | -- | -- |
| 33.26 | 0.269 | 9.83 | -1.14 | 0.693 | 0.393 | -- | -- | 0.303 | 19.5 | 71.02 | 652 | -- | -- |
| 44.17 | 0.31 | 9.84 | -1.29 | -- | 0.222 | -- | 0.979 | 0.258 | -- | 70.99 | 1461 | -- | -- |
| 35.88 | 0.281 | 9.83 | -1.19 | 0.484 | -- | 0.385 | -- | 0.278 | 19.7 | -- | -- | -- | -- |
| 36.3 | 0.282 | 9.83 | -1.2 | 0.485 | -- | -- | -- | 0.278 | 19.7 | -- | -- | -- | -- |
| 46.18 | 0.316 | 9.81 | -1.17 | -- | 0.26 | -- | -- | 0.285 | -- | 74 | 1404 | -- | -- |
| 67.01 | 0.381 | 9.8 | -- | 0.833 | 0.634 | -- | -- | 0.432 | 19.5 | 70.75 | 707 | -- | -- |
| 48.95 | 0.327 | 9.82 | -1.21 | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
| 74.16 | 0.403 | 9.8 | -- | 0.495 | -- | -- | -- | 0.412 | 19.5 | -- | -- | -- | -- |
| 79.52 | 0.415 | 9.78 | -- | -- | 0.442 | -- | -- | 0.449 | -- | 70 | 1432 | -- | -- |
| 87.26 | 0.436 | 9.79 | -- | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.85 | wind | 7 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 2 | 29.91 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 29.94 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 4 | 29.94 | wind | 1 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 6 | 30.03 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 7 | 30.07 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 9 | 30.09 | wind | 5 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 11 | 30.11 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 12 | 30.11 | humidity | 60 | 1440 | > th | dose dependent | rect. | 24 | 13 |
| 28 | 30.19 | wind | 3 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 41 | 30.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 56 | 30.24 | wind | 7 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 63 | 30.24 | temperature | 25 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 75 | 30.26 | wind | 7 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 80 | 30.27 | humidity | 60 | 1440 | > th | dose dependent | sin | 5 | NA |
| 81 | 30.27 | wind | 1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 109 | 30.31 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 126 | 30.33 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 127 | 30.33 | radiation | 20 | 4320 | < th | dose dependent | rect. | 7 | 4 |
| 134 | 30.34 | temperature | 25 | 14400 | > th | dose dependent | sin | 4 | NA |
| 180 | 30.41 | wind | 5 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 207 | 30.44 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 218 | 30.45 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 236 | 30.46 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 241 | 30.47 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 254 | 30.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 255 | 30.48 | radiation | 10 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 268 | 30.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 370 | 30.56 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 371 | 30.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 12 |
| 407 | 30.58 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 446 | 30.60 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 448 | 30.60 | humidity | 90 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 471 | 30.61 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 473 | 30.61 | temperature | 25 | 14400 | < th | dose independent | rect. | 1 | 11 |
| 525 | 30.63 | temperature | 25 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 533 | 30.63 | humidity | 70 | 720 | > th | dose independent | rect. | 22 | 20 |
| 564 | 30.64 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 566 | 30.64 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 613 | 30.66 | humidity | 90 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 663 | 30.68 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 664 | 30.68 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 697 | 30.69 | temperature | 25 | 14400 | > th | dose independent | sin | 5 | NA |
| 766 | 30.71 | radiation | 10 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 777 | 30.71 | humidity | 90 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 779 | 30.71 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 11 |
| 790 | 30.71 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 792 | 30.71 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 866 | 30.73 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 878 | 30.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 898 | 30.74 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 927 | 30.75 | humidity | 70 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 933 | 30.75 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 953 | 30.76 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 981 | 30.76 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |