Os05g0373300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to BONZAI1.
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Os05g0373300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to BONZAI1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.26 | 0.598 | 5.06 | 1.25 | 1.79 | 1.1 | -0.588 | -2.37 | -0.256 | 16.2 | 24.52 | 671 | -- | -- |
| 166.81 | 0.602 | 5.11 | 0.91 | 1.76 | 1.69 | -0.448 | -- | -0.385 | 16.2 | 21.77 | 727 | -- | -- |
| 162.91 | 0.594 | 5.06 | 1.23 | 1.75 | 1.14 | -- | -2.22 | -0.263 | 16.2 | 24.23 | 771 | -- | -- |
| 167.36 | 0.603 | 5.12 | 0.911 | 1.74 | 1.7 | -- | -- | -0.384 | 16.2 | 21.84 | 775 | -- | -- |
| 314.25 | 0.826 | 5.01 | 1.41 | -- | 1.65 | -- | -2.26 | -0.146 | -- | 26.68 | 1106 | -- | -- |
| 196.34 | 0.657 | 5.16 | 0.491 | 1.77 | -- | -0.62 | -- | -0.598 | 15.8 | -- | -- | -- | -- |
| 197.47 | 0.658 | 5.16 | 0.482 | 1.77 | -- | -- | -- | -0.602 | 15.9 | -- | -- | -- | -- |
| 321.45 | 0.835 | 5.07 | 0.942 | -- | 1.78 | -- | -- | -0.253 | -- | 25.8 | 1089 | -- | -- |
| 186.11 | 0.635 | 5.14 | -- | 1.76 | 1.27 | -- | -- | -0.532 | 16.1 | 21.6 | 652 | -- | -- |
| 369.91 | 0.899 | 5.16 | 0.409 | -- | -- | -- | -- | -0.649 | -- | -- | -- | -- | -- |
| 203.59 | 0.667 | 5.17 | -- | 1.76 | -- | -- | -- | -0.655 | 15.9 | -- | -- | -- | -- |
| 341.67 | 0.861 | 5.11 | -- | -- | 1.36 | -- | -- | -0.437 | -- | 25.8 | 1072 | -- | -- |
| 374.33 | 0.903 | 5.17 | -- | -- | -- | -- | -- | -0.694 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 23 | 160.66 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 49 | 161.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 50 | 161.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 51 | 161.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 21 |
| 118 | 162.40 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 119 | 162.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 133 | 162.57 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 22 |
| 141 | 162.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 146 | 162.78 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 21 |
| 154 | 162.85 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 19 |
| 164 | 162.96 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 21 |
| 173 | 163.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 181 | 163.07 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 23 |
| 225 | 163.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 227 | 163.33 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 22 |
| 307 | 163.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 341 | 163.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 369 | 164.11 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 23 |
| 373 | 164.13 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 380 | 164.15 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 426 | 164.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 433 | 164.41 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 439 | 164.44 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 471 | 164.57 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 23 |
| 480 | 164.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 486 | 164.64 | temperature | 15 | 720 | > th | dose dependent | sin | 13 | NA |
| 502 | 164.72 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 504 | 164.73 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 517 | 164.80 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 536 | 164.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 578 | 165.05 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 17 |
| 614 | 165.16 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 624 | 165.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 629 | 165.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 656 | 165.32 | temperature | 15 | 1440 | > th | dose dependent | sin | 5 | NA |
| 661 | 165.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 16 |
| 683 | 165.37 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 695 | 165.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 742 | 165.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 744 | 165.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 758 | 165.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 895 | 165.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 896 | 165.64 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 19 |