BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0895300 Os01g0895300|AK073544
(278 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0895300 Cytochrome b561 / ferric reductase transmembra... 422 e-118
Os05g0556400 DOMON related domain containing protein 143 1e-34
Os01g0895200 DOMON related domain containing protein 129 3e-30
Os01g0680900 DOMON related domain containing protein 128 5e-30
Os05g0237200 DOMON related domain containing protein 116 2e-26
Os03g0194900 DOMON related domain containing protein 99 4e-21
Os08g0524200 DOMON related domain containing protein 94 1e-19
Os03g0194300 DOMON related domain containing protein 78 6e-15
Os04g0495400 Cytochrome b561 / ferric reductase transmembra... 76 3e-14
Os01g0893700 DOMON related domain containing protein 69 3e-12
>Os01g0895300 Cytochrome b561 / ferric reductase transmembrane domain containing
protein
Length = 278
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/258 (81%), Positives = 210/258 (81%)
Query: 21 KQYKLGGTSSRSCPPDQGSLSLVAKNTLVVAQSSRIYVAFQFTAPQPTPYLIYAVGPSNT 80
KQYKLGGTSSRSCPPDQGSLSLVAKNTLVVAQSSRIYVAFQFTAPQPTPYLIYAVGPSNT
Sbjct: 21 KQYKLGGTSSRSCPPDQGSLSLVAKNTLVVAQSSRIYVAFQFTAPQPTPYLIYAVGPSNT 80
Query: 81 NPSGNGDYLAQHQVYTSAAVNYXXXXXXXXXXXXXDTKKWHGAMAGLGWGVLMPVGIALA 140
NPSGNGDYLAQHQVYTSAAVNY DTKKWHGAMAGLGWGVLMPVGIALA
Sbjct: 81 NPSGNGDYLAQHQVYTSAAVNYAAGTTSSAGGGAADTKKWHGAMAGLGWGVLMPVGIALA 140
Query: 141 RYFKKHDPFWFYAHISVQXXXXXXXXXXXXXXXKLNDDVPGGDTHQAIGITVLVLGCLQV 200
RYFKKHDPFWFYAHISVQ KLNDDVPGGDTHQAIGITVLVLGCLQV
Sbjct: 141 RYFKKHDPFWFYAHISVQGVGFVLGVAGVVAGFKLNDDVPGGDTHQAIGITVLVLGCLQV 200
Query: 201 LAFLARPDKSSKVRRYWNWYHHNVGRXXXXXXXXNIFIGLNIAHEGNAARAGYGIXXXXX 260
LAFLARPDKSSKVRRYWNWYHHNVGR NIFIGLNIAHEGNAARAGYGI
Sbjct: 201 LAFLARPDKSSKVRRYWNWYHHNVGRAAVACAAANIFIGLNIAHEGNAARAGYGIFLVVL 260
Query: 261 XXXXXXXEVKLWRSRRSG 278
EVKLWRSRRSG
Sbjct: 261 ALVAVFLEVKLWRSRRSG 278
>Os05g0556400 DOMON related domain containing protein
Length = 369
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 128/265 (48%), Gaps = 16/265 (6%)
Query: 21 KQYKLGGTSSRSCPPDQGSLSLVAKNT--LVVAQSSRIYVAFQ--FTAPQPTPYLIYAVG 76
KQ+ L G +S ++G L + N VV Q +RIY+AFQ F+ ++I A G
Sbjct: 104 KQFALRGKTSGKVVVNRGFLVSNSNNHDHTVVVQQARIYLAFQLQFSYRLTHQHIILAFG 163
Query: 77 PSNTNPSGNGDYLAQHQVYTSAAVNYXXXXXXXXXXXXXDTKKWHGAMAGLGWGVLMPVG 136
S P N L +HQ TS ++ ++ HGA+ WGVLMP+G
Sbjct: 164 SSI--PVNNK--LTKHQDKTSFTFDFTTGKAFVDGSFPYGLRRAHGALNLFAWGVLMPIG 219
Query: 137 IALARYFKKHDPFWFYAHISVQXXXXXX----XXXXXXXXXKLNDDVPGGDTHQAIGITV 192
LARYF++ DP WFY H+ VQ K+ D+P H+ +GI +
Sbjct: 220 AILARYFRRMDPLWFYLHVGVQFVAFIIGLAGVVAGVALYNKIQADIP---AHRGLGIFI 276
Query: 193 LVLGCLQVLAFLARPDKSSKVRRYWNWYHHNVGRXXXXXXXXNIFIGLNIAHEGNAARAG 252
LVLG LQ+LAF RP+ SK R+YWNWYHH GR NI +G+++ N+ + G
Sbjct: 277 LVLGILQILAFFLRPNTDSKYRKYWNWYHHWSGRLVLFFAAVNIVLGIHVGGGDNSWKIG 336
Query: 253 YGIXXXXXXXXXXXXEVKLWRSRRS 277
YG E L R+R S
Sbjct: 337 YGFNLAIILLAVIGLEFML-RTRWS 360
>Os01g0895200 DOMON related domain containing protein
Length = 437
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 116 DTKKWHGAMAGLGWGVLMPVGIALARYFKKHDPFWFYAHISVQXXXXXXXXXXXXXXXKL 175
+K+ HG +A + WG ++P G+A+AR+ K+ +P WFYAH VQ +L
Sbjct: 280 SSKRRHGVLAVVSWGAMIPAGVAMARFMKRFEPLWFYAHAGVQGLGFVVGAVAIVAGFRL 339
Query: 176 N--DDVPGGDTHQAIGITVLVLGCLQVLAFLARPDKSSKVRRYWNWYHHNVGRXXXXXXX 233
+ DDV H+A+G+ VLV CLQV+A LARP K +K R+YWNWYHH VGR
Sbjct: 340 DGEDDV---GAHKAVGVAVLVCACLQVMAVLARPIKEAKARKYWNWYHHYVGRAAVVLGV 396
Query: 234 XNIFIGLNIAHEGNAARAGYGI 255
N+F G+++A EG+ YGI
Sbjct: 397 GNVFYGMSLAKEGDEWSYVYGI 418
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 21 KQYKLGGTSSRSCPPDQGSLSLV--AKNTLVVAQSSRIYVAFQFTAPQPTPYLIYAVGPS 78
+QY LGGTSSRSCPP QG LSL A +V+Q SR+Y+AFQF+ QP L+YAVGP+
Sbjct: 124 RQYYLGGTSSRSCPPGQGKLSLSTGAAAPTIVSQGSRLYLAFQFSG-QPRTDLVYAVGPA 182
Query: 79 NTNPSGNGDYLAQHQVYTSAAVN 101
+ P NG +LAQHQ TS +
Sbjct: 183 GSLPGTNG-FLAQHQYMTSGTIT 204
>Os01g0680900 DOMON related domain containing protein
Length = 335
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 8/216 (3%)
Query: 61 QFTAPQPTPYLIYAVGPSNTNPSGNGDYLAQHQVYTSAAVNYXXXXXXXXXXXXXDTKKW 120
QF+ TP + A + + D L +HQ TS ++ K+
Sbjct: 110 QFSLRGKTPSQVVADEGFLQSKDHDHDRLTEHQGKTSFTFDFTTGSSSGSSYPD-GLKRA 168
Query: 121 HGAMAGLGWGVLMPVGIALARYFKKHDPFWFYAHISVQXXXXXX----XXXXXXXXXKLN 176
HGA+ WGVL+P+G +ARY ++ DP WFY H +Q K+
Sbjct: 169 HGALNLFAWGVLLPIGAIIARYCRRWDPLWFYLHAGIQLVGFILGLAGIVAGVSLYNKIQ 228
Query: 177 DDVPGGDTHQAIGITVLVLGCLQVLAFLARPDKSSKVRRYWNWYHHNVGRXXXXXXXXNI 236
DVP H+ +GI VLVLG LQ+LAF RP K SK R+YWNWYHH VGR NI
Sbjct: 229 ADVP---AHRGLGIFVLVLGILQILAFFLRPHKDSKYRKYWNWYHHWVGRLALFFAAINI 285
Query: 237 FIGLNIAHEGNAARAGYGIXXXXXXXXXXXXEVKLW 272
+G+ + GN+ + GYG EV LW
Sbjct: 286 VLGIKVGAAGNSWKIGYGFNLAILLITIITLEVLLW 321
>Os05g0237200 DOMON related domain containing protein
Length = 487
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 111/252 (44%), Gaps = 4/252 (1%)
Query: 21 KQYKLGGTSSRSCPPDQGSLSLVAKNTLVVAQSSRIYVAFQFTAPQPTPYLIYAVGPSNT 80
KQY L +S D+G L + V IY+ FQ P + S
Sbjct: 216 KQYYLSNQTSSGVKVDEGKLLTTDVPSAAVLYGDNIYLVFQVKFPLHIARQSVILAFSKI 275
Query: 81 NPSGNGDYLAQHQVYTSAAVNYXXXXXXXXXXXXXDTKKWHGAMAGLGWGVLMPVGIALA 140
+P N +LA+H T+ + ++ K+ HGA A GWGVL+P+G A
Sbjct: 276 SP--NKFHLAEHDDKTTLSFDFSSGDSVSTYYPY-QLKRNHGAFAIFGWGVLVPLGAIAA 332
Query: 141 RYFKKHDPFWFYAHISVQXXXXXXXXXXXXXXXKL-NDDVPGGDTHQAIGITVLVLGCLQ 199
RY + DP W+Y H+ VQ L N TH+++GI+VL LG LQ
Sbjct: 333 RYLRHKDPLWYYLHVLVQFLGYIIGFAGVVSGIALYNRTYSNFTTHRSLGISVLALGSLQ 392
Query: 200 VLAFLARPDKSSKVRRYWNWYHHNVGRXXXXXXXXNIFIGLNIAHEGNAARAGYGIXXXX 259
V+AF P+K S+VR+ WN YHH +GR NI +G+ ++ + + YG
Sbjct: 393 VIAFFLHPNKDSQVRKCWNQYHHWLGRICIFLAAINIVLGIELSDTNISWKVIYGAIISV 452
Query: 260 XXXXXXXXEVKL 271
EV +
Sbjct: 453 MIISTTFLEVMM 464
>Os03g0194900 DOMON related domain containing protein
Length = 384
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 121 HGAMAGLGWGVLMPVGIALARY---FKKHDPFWFYAHISVQXXXXXXXXXXXXXXXKLND 177
HG + + WG+L+P+G +ARY F+ DP WFY HI+ Q KL
Sbjct: 203 HGILNAVSWGILIPMGAMIARYLRVFEAADPAWFYLHITCQLSGYILGVAGWALGLKLGS 262
Query: 178 DVPGG--DTHQAIGITVLVLGCLQVLAFLARPDKSSKVRRYWNWYHHNVGRXXXXXXXXN 235
+ G H+ IGI + L LQV A L RPDK +K R YWN YHH+VG N
Sbjct: 263 ESKGITYSAHRNIGIAIFCLATLQVFALLLRPDKKNKYRFYWNIYHHSVGYSAIVLAAVN 322
Query: 236 IFIGLNI 242
IF GL+I
Sbjct: 323 IFKGLDI 329
>Os08g0524200 DOMON related domain containing protein
Length = 390
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 118 KKWHGAMAGLGWGVLMPVGIALARY---FKKHDPFWFYAHISVQXXXXXXXXXXXXXXXK 174
K HG + + WG+L+P+G ARY FK DP WFY H++ Q
Sbjct: 205 KNTHGILNAVSWGLLLPMGAIFARYLKTFKSADPAWFYLHVACQLIGYGVGVSGWATGIH 264
Query: 175 LNDDVPGG--DTHQAIGITVLVLGCLQVLAFLARPDKSSKVRRYWNWYHHNVGRXXXXXX 232
L + G H+ IGITV LG LQ+ A RP K K R YWN YHH+VG
Sbjct: 265 LGNLSKGITYSLHRNIGITVFALGTLQIFALFLRPKKDHKYRIYWNAYHHSVGYTIIILG 324
Query: 233 XXNIFIGLNIAHEGNAARAGYGIXXXXXXXXXXXXEVKLW 272
NIF G++I + + GY I E W
Sbjct: 325 IVNIFKGMSILNVEQKWKTGYIITISILGGIAVILEAVTW 364
>Os03g0194300 DOMON related domain containing protein
Length = 417
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 117 TKKW-HGAMAGLGWGVLMPVGIALARYFK---KHDPFWFYAHISVQXXXXXXXXXXXXXX 172
T +W HG++ L WG L+PVG A+ARY + P WFYAH ++Q
Sbjct: 226 TLQWTHGSLNALSWGFLLPVGAAVARYLRPCASTGPAWFYAHAAIQATGYALGAAGFALG 285
Query: 173 XKLNDDVPGG--DTHQAIGITVLVLGCLQVLAFLARPDKSSKVRRYWNWYHHNVGRXXXX 230
+ PG H+ +GI G LQ LA L RP +++ R+YW YHH VG
Sbjct: 286 LVMGSASPGVTYKLHRGLGIAAATAGSLQTLAMLFRPKTTNRYRKYWKSYHHLVGYGCVV 345
Query: 231 XXXXNIFIGLNIAHEGNAA-RAGYGIXXXXXXXXXXXXEVKLW 272
N+F G + G + + GY + EV W
Sbjct: 346 VGVVNVFQGFEVMGLGASYWKLGYCMALATLAGGCVALEVNAW 388
>Os04g0495400 Cytochrome b561 / ferric reductase transmembrane domain containing
protein
Length = 84
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 199 QVLAFLARPDKSSKVRRYWNWYHHNVGRXXXXXXXXNIFIGLNIAHEGNAARAGYG 254
QV+AFLARPDK+SKVRR+WNWYHH +GR NIF+GL+IA E +A YG
Sbjct: 6 QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSYG 61
>Os01g0893700 DOMON related domain containing protein
Length = 300
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 21 KQYKLGGTSSRSCPPDQGSLSLV--AKNTLVVAQSSRIYVAFQFTAPQPTPYLIYAVGPS 78
+QY LGGT+S CPPDQG LSL A +V++ SR+Y+AFQ + QP +IYAVGP+
Sbjct: 118 RQYYLGGTTSSLCPPDQGKLSLSRGAAAPTIVSKGSRLYLAFQLSG-QPLTNVIYAVGPA 176
Query: 79 NTNPSGNGDYLAQHQVYTSAAVN 101
T P +G LAQH+ + ++
Sbjct: 177 GTLPGPSG-LLAQHKDMAAGTIS 198
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,778,982
Number of extensions: 260459
Number of successful extensions: 464
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 11
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)