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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0495400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome b561 / ferric reductase transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.77 (0.0828) R2 : 0.409
β1 : -4.32 (0.538) R2dD : 0.541 R2D : -0.263
β2 : 1.64 (0.145) R2dC : 0.168 R2C : 0.13
β3 : 3.34 (0.311) R2dE : 0.458 R2E : -0.0533
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.3 (2.42) R2dD*E : 0.337 R2D*E : -0.531
γ1 : 0.0606 (0.159) R2dN8 : 0.000291 R2N8 : -0.00757
σ : 1.1
deviance : 556.96
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_____
C
peak time of C : 9.39
E
wheather : temperature
threshold : 25.76
memory length : 1146
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.68
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
547.94 1.1 5.76 -4.44 1.61 3.32 1.68 -14.5 0.134 9.2 26.03 1189 7.5 --
578.61 1.12 5.39 -1.5 1.78 2.07 1.94 -- 0.698 9.47 25.82 958 6.79 --
556.96 1.1 5.77 -4.32 1.64 3.34 -- -14.3 0.0606 9.39 25.76 1146 7.68 --
592.04 1.13 5.41 -1.4 1.76 2.04 -- -- 0.648 9.48 25.63 970 7.32 --
699.04 1.23 5.8 -4.22 -- 3.27 -- -13.3 -0.0493 -- 25.36 1235 7.07 --
699.93 1.24 5.41 -1.02 1.68 -- 2.02 -- 0.668 8.25 -- -- -- --
712.47 1.25 5.41 -0.956 1.68 -- -- -- 0.666 8.22 -- -- -- --
644.32 1.18 5.6 -1.75 -- 3.32 -- -- 0.215 -- 4.86 1091 6.69 --
641.45 1.18 5.37 -- 1.76 1.75 -- -- 0.829 9.35 25.86 951 6.98 --
868.57 1.38 5.45 -0.944 -- -- -- -- 0.686 -- -- -- -- --
736.56 1.27 5.39 -- 1.68 -- -- -- 0.773 8.26 -- -- -- --
695.55 1.23 5.51 -- -- 2.7 -- -- 0.516 -- -20.74 1209 7.63 --
892.05 1.39 5.43 -- -- -- -- -- 0.79 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 503.43 wind 5 43200 > th dose dependent rect. 15 1
2 504.32 humidity 80 43200 < th dose independent rect. 21 2
3 505.83 humidity 80 43200 > th dose independent rect. 21 2
10 512.75 radiation 10 43200 > th dose independent rect. 9 1
14 514.10 wind 3 43200 > th dose dependent rect. 12 19
15 514.11 wind 3 43200 > th dose dependent rect. 10 7
18 514.38 humidity 80 43200 < th dose dependent rect. 21 2
20 514.53 wind 3 43200 > th dose dependent rect. 11 5
21 514.56 wind 3 43200 > th dose dependent rect. 9 9
28 515.06 radiation 40 43200 > th dose independent rect. 9 2
29 515.06 wind 3 43200 > th dose dependent sin 21 NA
35 515.32 wind 5 43200 < th dose independent rect. 13 17
38 515.45 wind 5 43200 > th dose independent rect. 14 9
48 515.81 wind 3 43200 > th dose dependent rect. 9 12
55 515.93 wind 5 43200 < th dose independent sin 18 NA
69 516.31 wind 9 43200 < th dose dependent rect. 9 7
71 516.34 wind 5 43200 < th dose independent rect. 12 11
72 516.34 wind 5 43200 > th dose independent rect. 13 15
79 516.44 humidity 80 43200 < th dose dependent rect. 20 10
100 516.69 wind 5 43200 > th dose independent sin 18 NA
113 516.88 humidity 80 43200 < th dose independent rect. 20 10
119 516.90 wind 5 43200 < th dose independent rect. 9 11
131 517.13 radiation 20 43200 < th dose independent rect. 8 1
135 517.17 wind 3 43200 > th dose dependent rect. 6 13
151 517.43 wind 5 43200 > th dose independent rect. 9 11
159 517.57 radiation 40 43200 < th dose independent rect. 9 1
187 517.94 wind 5 43200 > th dose dependent rect. 14 7
233 518.78 wind 9 43200 < th dose dependent rect. 11 4
234 518.83 wind 7 43200 < th dose independent rect. 15 1
241 518.96 temperature 30 43200 > th dose dependent rect. 11 1
246 519.04 wind 5 43200 > th dose independent rect. 15 1
274 519.66 wind 5 43200 > th dose independent rect. 11 6
302 520.21 radiation 40 43200 > th dose independent rect. 7 4
323 520.25 temperature 30 43200 > th dose dependent rect. 8 5
350 520.49 temperature 30 43200 > th dose independent rect. 10 1
351 520.52 wind 5 43200 < th dose independent rect. 11 6
354 520.55 temperature 30 43200 < th dose independent rect. 3 10
382 520.58 temperature 30 43200 < th dose independent rect. 8 5
424 520.99 temperature 30 43200 < th dose independent rect. 10 1
427 521.05 temperature 30 43200 > th dose independent rect. 8 5
477 521.35 temperature 30 43200 < th dose independent sin 7 NA
478 521.37 wind 5 43200 > th dose independent rect. 12 4
547 521.75 temperature 30 43200 > th dose independent sin 7 NA
582 521.99 temperature 30 43200 > th dose dependent sin 8 NA
603 522.09 radiation 10 43200 < th dose dependent rect. 9 2
627 522.41 wind 9 43200 < th dose dependent sin 23 NA
641 522.70 radiation 30 43200 > th dose dependent rect. 9 2
668 523.01 wind 3 43200 < th dose dependent rect. 9 1
737 523.35 wind 5 43200 < th dose independent rect. 12 4
792 523.72 radiation 20 43200 < th dose independent rect. 20 14
798 523.73 radiation 20 43200 < th dose independent rect. 22 12
859 524.05 wind 9 43200 < th dose dependent rect. 12 2
936 524.53 wind 9 43200 < th dose dependent rect. 8 14