BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0495400 Os04g0495400|J065107G02
(84 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07570.1 | chr3:2418205-2420206 REVERSE LENGTH=370 75 5e-15
AT3G61750.1 | chr3:22857897-22859254 REVERSE LENGTH=399 62 6e-11
AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467 57 2e-09
AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394 49 5e-07
AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405 49 5e-07
AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405 47 2e-06
AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395 47 3e-06
AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396 46 3e-06
>AT3G07570.1 | chr3:2418205-2420206 REVERSE LENGTH=370
Length = 369
Score = 75.5 bits (184), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 6 QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSYG 61
Q++A LARPDK SK R++WNWYHH IGR I++AI NIF G+H+A+ +++ YG
Sbjct: 293 QMLALLARPDKQSKYRKYWNWYHHNIGRLLIILAISNIFYGIHLAKAGTSWNGGYG 348
>AT3G61750.1 | chr3:22857897-22859254 REVERSE LENGTH=399
Length = 398
Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 6 QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQE 52
QV+AF ARP K +K+RR+WNWYHH+IGR ++ NI LG+ +A
Sbjct: 299 QVLAFFARPQKETKMRRYWNWYHHWIGRISLFFGAVNIVLGIRMADN 345
>AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467
Length = 466
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 6 QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSY 60
Q+++ ARP+K K R++WNWYHH +G I+++I NI+ GL I Q S + ++Y
Sbjct: 303 QILSLKARPNKDHKYRKYWNWYHHTMGYIVIVLSIYNIYKGLSILQPGSIWKIAY 357
>AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394
Length = 393
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 2 TWAT-QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSY 60
T AT Q+ A L RP K K R +WN YHH +G A + + I N+F GL+I + Y +Y
Sbjct: 298 TLATIQMFAMLLRPKKDHKYRFYWNIYHHGVGYAILTLGIINVFKGLNILKPQDTYKTAY 357
>AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405
Length = 404
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 13 RPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAY 56
RP T+K RR+W YHH++G A +++ + N+F G + +E +Y
Sbjct: 309 RPKTTNKFRRYWKSYHHFVGYACVVMGVVNVFQGFEVLREGRSY 352
>AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405
Length = 404
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 2 TWAT-QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHI 49
T+AT QV A L RP K R +WN YHH +G I+++I NIF G I
Sbjct: 287 TFATLQVFALLVRPKPDHKYRTYWNVYHHTVGYTTIILSIVNIFKGFDI 335
>AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395
Length = 394
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 6 QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSY 60
Q+ A L RP K K R WN YHH +G + +++ I N+F GL I Y +Y
Sbjct: 304 QMFAMLLRPRKDHKFRFVWNIYHHGVGYSILILGIINVFKGLSILNPKHTYKTAY 358
>AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396
Length = 395
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 6 QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHI 49
QV A RP K R +WN YHH +G + I++A+ N+F GL I
Sbjct: 294 QVFAMFLRPKPEHKYRVYWNIYHHTVGYSVIILAVVNVFKGLDI 337
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.138 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,360,683
Number of extensions: 32979
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 8
Length of query: 84
Length of database: 11,106,569
Length adjustment: 55
Effective length of query: 29
Effective length of database: 9,598,689
Effective search space: 278361981
Effective search space used: 278361981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)