BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0495400 Os04g0495400|J065107G02
(84 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0495400 Cytochrome b561 / ferric reductase transmembra... 145 6e-36
Os01g0895300 Cytochrome b561 / ferric reductase transmembra... 77 4e-15
Os01g0895200 DOMON related domain containing protein 75 2e-14
Os01g0680900 DOMON related domain containing protein 62 6e-11
>Os04g0495400 Cytochrome b561 / ferric reductase transmembrane domain
containing protein
Length = 84
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 71/84 (84%)
Query: 1 ITWATQVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSY 60
ITWATQVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSY
Sbjct: 1 ITWATQVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSY 60
Query: 61 GXXXXXXXXXXXXXEMNRCYSDDD 84
G EMNRCYSDDD
Sbjct: 61 GVFVAVWVIAVAAFEMNRCYSDDD 84
>Os01g0895300 Cytochrome b561 / ferric reductase transmembrane domain containing
protein
Length = 278
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 6 QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSYG 61
QV+AFLARPDK+SKVRR+WNWYHH +GRAA+ A NIF+GL+IA E +A YG
Sbjct: 199 QVLAFLARPDKSSKVRRYWNWYHHNVGRAAVACAAANIFIGLNIAHEGNAARAGYG 254
>Os01g0895200 DOMON related domain containing protein
Length = 437
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 6 QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSYG 61
QVMA LARP K +K R++WNWYHHY+GRAA+++ +GN+F G+ +A+E + YG
Sbjct: 362 QVMAVLARPIKEAKARKYWNWYHHYVGRAAVVLGVGNVFYGMSLAKEGDEWSYVYG 417
>Os01g0680900 DOMON related domain containing protein
Length = 335
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 6 QVMAFLARPDKTSKVRRFWNWYHHYIGRAAILVAIGNIFLGLHIAQEVSAYIVSYG 61
Q++AF RP K SK R++WNWYHH++GR A+ A NI LG+ + +++ + YG
Sbjct: 248 QILAFFLRPHKDSKYRKYWNWYHHWVGRLALFFAAINIVLGIKVGAAGNSWKIGYG 303
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,154,263
Number of extensions: 51933
Number of successful extensions: 158
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 5
Length of query: 84
Length of database: 17,035,801
Length adjustment: 54
Effective length of query: 30
Effective length of database: 14,216,245
Effective search space: 426487350
Effective search space used: 426487350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)