Os01g0680900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DOMON related domain containing protein.
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Os01g0680900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DOMON related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.08 | 0.346 | 8.2 | -1.27 | 0.822 | 1.26 | -0.274 | -2.28 | -0.247 | 14.4 | 21.68 | 843 | -- | -- |
| 57.05 | 0.352 | 8.15 | -0.748 | 0.851 | 1.09 | -0.0892 | -- | -0.108 | 14.7 | 20.25 | 888 | -- | -- |
| 54.28 | 0.343 | 8.2 | -1.25 | 0.852 | 1.22 | -- | -2.12 | -0.241 | 14.6 | 21.6 | 889 | -- | -- |
| 57.07 | 0.352 | 8.15 | -0.752 | 0.852 | 1.09 | -- | -- | -0.109 | 14.8 | 20.24 | 891 | -- | -- |
| 66.37 | 0.379 | 8.2 | -1.13 | -- | 1.57 | -- | -1.9 | -0.257 | -- | 19.52 | 204 | -- | -- |
| 83.87 | 0.429 | 8.11 | -0.431 | 0.809 | -- | -0.000593 | -- | 0.101 | 16 | -- | -- | -- | -- |
| 83.87 | 0.429 | 8.11 | -0.431 | 0.809 | -- | -- | -- | 0.101 | 16 | -- | -- | -- | -- |
| 68.73 | 0.386 | 8.16 | -0.82 | -- | 1.62 | -- | -- | -0.165 | -- | 17.3 | 203 | -- | -- |
| 70.23 | 0.39 | 8.12 | -- | 0.846 | 0.866 | -- | -- | 0.0147 | 14.9 | 21.63 | 879 | -- | -- |
| 119.6 | 0.511 | 8.1 | -0.464 | -- | -- | -- | -- | 0.0794 | -- | -- | -- | -- | -- |
| 88.77 | 0.441 | 8.1 | -- | 0.818 | -- | -- | -- | 0.149 | 16 | -- | -- | -- | -- |
| 84.6 | 0.428 | 8.13 | -- | -- | 1.3 | -- | -- | -0.0439 | -- | 19.36 | 150 | -- | -- |
| 125.28 | 0.522 | 8.09 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 3 | 52.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 6 | 52.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 11 | 52.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 28 | 53.15 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 38 | 53.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 40 | 53.29 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 15 |
| 67 | 53.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 70 | 53.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 71 | 53.61 | temperature | 20 | 720 | > th | dose dependent | sin | 19 | NA |
| 73 | 53.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 80 | 53.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 85 | 53.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 130 | 54.04 | temperature | 25 | 720 | < th | dose independent | sin | 21 | NA |
| 148 | 54.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 192 | 54.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 292 | 54.89 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 15 |
| 296 | 54.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 302 | 54.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 314 | 54.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 348 | 55.20 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 351 | 55.21 | temperature | 25 | 720 | > th | dose independent | sin | 21 | NA |
| 370 | 55.28 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 457 | 55.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 479 | 55.56 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 593 | 55.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 600 | 55.74 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 601 | 55.74 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 628 | 55.77 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 684 | 55.83 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 716 | 55.88 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 798 | 56.01 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 799 | 56.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 850 | 56.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 906 | 56.15 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 918 | 56.17 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 941 | 56.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 967 | 56.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 995 | 56.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 1 |