BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0680900 Os01g0680900|AK069379
(335 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0680900 DOMON related domain containing protein 517 e-147
Os05g0556400 DOMON related domain containing protein 373 e-103
Os05g0237200 DOMON related domain containing protein 220 1e-57
Os01g0895300 Cytochrome b561 / ferric reductase transmembra... 123 2e-28
Os01g0895200 DOMON related domain containing protein 120 1e-27
Os03g0194900 DOMON related domain containing protein 110 1e-24
Os08g0524200 DOMON related domain containing protein 108 5e-24
Os03g0194300 DOMON related domain containing protein 86 3e-17
Os09g0500900 Cytochrome b561 / ferric reductase transmembra... 69 7e-12
>Os01g0680900 DOMON related domain containing protein
Length = 335
Score = 517 bits (1332), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/309 (83%), Positives = 259/309 (83%)
Query: 27 QTSSCDDALPPALAGNYSGLACRPVWNNFVLRYAQGKDNVLRVVISSMYSTGWVGMGFSK 86
QTSSCDDALPPALAGNYSGLACRPVWNNFVLRYAQGKDNVLRVVISSMYSTGWVGMGFSK
Sbjct: 27 QTSSCDDALPPALAGNYSGLACRPVWNNFVLRYAQGKDNVLRVVISSMYSTGWVGMGFSK 86
Query: 87 DGMMVGSSAMVGWVGKTGLSHVKQFSLRGKTPSQVVADEGFLQSKDHDHDRLTEHQXXXX 146
DGMMVGSSAMVGWVGKTGLSHVKQFSLRGKTPSQVVADEGFLQSKDHDHDRLTEHQ
Sbjct: 87 DGMMVGSSAMVGWVGKTGLSHVKQFSLRGKTPSQVVADEGFLQSKDHDHDRLTEHQGKTS 146
Query: 147 XXXXXXXXXXXXXXYPDGLKRAHGALNLFAWGVLLPIGAIIARYCRRWDPLWFYLHAGIQ 206
YPDGLKRAHGALNLFAWGVLLPIGAIIARYCRRWDPLWFYLHAGIQ
Sbjct: 147 FTFDFTTGSSSGSSYPDGLKRAHGALNLFAWGVLLPIGAIIARYCRRWDPLWFYLHAGIQ 206
Query: 207 LVGFILGLAGIVAGVSLYNKIQADVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYW 266
LVGFILGLAGIVAGVSLYNKIQADVPAHR AFFLRPHKDSKYRKYW
Sbjct: 207 LVGFILGLAGIVAGVSLYNKIQADVPAHRGLGIFVLVLGILQILAFFLRPHKDSKYRKYW 266
Query: 267 NWYHHWVGRLALFFAAINIVLGIKVGAAGNSWKIGYGFNXXXXXXXXXXXXXXXXXRWKN 326
NWYHHWVGRLALFFAAINIVLGIKVGAAGNSWKIGYGFN RWKN
Sbjct: 267 NWYHHWVGRLALFFAAINIVLGIKVGAAGNSWKIGYGFNLAILLITIITLEVLLWTRWKN 326
Query: 327 NNSSSMPTY 335
NNSSSMPTY
Sbjct: 327 NNSSSMPTY 335
>Os05g0556400 DOMON related domain containing protein
Length = 369
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/347 (55%), Positives = 220/347 (63%), Gaps = 41/347 (11%)
Query: 29 SSCDDALPPALAGNYSGLACRPVWNNFVLRYAQGKDNVLRVVISSMYSTGWVGMGFSKDG 88
SC+ LP L GNYSGL C+PVWNNFVLRY Q K+NVLRVV+S+MYSTGWVGMGFS+DG
Sbjct: 24 ESCNTELPGVLVGNYSGLNCQPVWNNFVLRYHQDKNNVLRVVLSTMYSTGWVGMGFSRDG 83
Query: 89 MMVGSSAMVGWVGKTGLSHVKQFSLRGKTPSQVVADEGFLQSKDHDHD------------ 136
+MVGSSAMVGW+G+ GL HVKQF+LRGKT +VV + GFL S ++HD
Sbjct: 84 LMVGSSAMVGWIGRKGLPHVKQFALRGKTSGKVVVNRGFLVSNSNNHDHTVVVQQARIYL 143
Query: 137 ---------------------------RLTEHQXXXXXXXXXXXXXXXXX-XYPDGLKRA 168
+LT+HQ +P GL+RA
Sbjct: 144 AFQLQFSYRLTHQHIILAFGSSIPVNNKLTKHQDKTSFTFDFTTGKAFVDGSFPYGLRRA 203
Query: 169 HGALNLFAWGVLLPIGAIIARYCRRWDPLWFYLHAGIQLVGFILGLAGIVAGVSLYNKIQ 228
HGALNLFAWGVL+PIGAI+ARY RR DPLWFYLH G+Q V FI+GLAG+VAGV+LYNKIQ
Sbjct: 204 HGALNLFAWGVLMPIGAILARYFRRMDPLWFYLHVGVQFVAFIIGLAGVVAGVALYNKIQ 263
Query: 229 ADVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFFAAINIVLG 288
AD+PAHR AFFLRP+ DSKYRKYWNWYHHW GRL LFFAA+NIVLG
Sbjct: 264 ADIPAHRGLGIFILVLGILQILAFFLRPNTDSKYRKYWNWYHHWSGRLVLFFAAVNIVLG 323
Query: 289 IKVGAAGNSWKIGYGFNXXXXXXXXXXXXXXXXXRWKNNNSSSMPTY 335
I VG NSWKIGYGFN RW + S PTY
Sbjct: 324 IHVGGGDNSWKIGYGFNLAIILLAVIGLEFMLRTRW-SKESEPTPTY 369
>Os05g0237200 DOMON related domain containing protein
Length = 487
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/280 (40%), Positives = 153/280 (54%), Gaps = 37/280 (13%)
Query: 61 QGKDNVLRVVISSMYSTGWVGMGFSKDGMMVGSSAMVGWVGKTGLSHVKQFSLRGKTPSQ 120
+ +DN+ +V+S+ YS+GWVG+GFS DG MVGSSAMVGW+ G +++KQ+ L +T S
Sbjct: 168 KSEDNITSIVLSAPYSSGWVGIGFSNDGKMVGSSAMVGWIDNQGRAYIKQYYLSNQTSSG 227
Query: 121 VVADEGFLQSKD-------------------------------------HDHDRLTEHQX 143
V DEG L + D + L EH
Sbjct: 228 VKVDEGKLLTTDVPSAAVLYGDNIYLVFQVKFPLHIARQSVILAFSKISPNKFHLAEHDD 287
Query: 144 XXXXXXXXXXXXXXXXXYPDGLKRAHGALNLFAWGVLLPIGAIIARYCRRWDPLWFYLHA 203
YP LKR HGA +F WGVL+P+GAI ARY R DPLW+YLH
Sbjct: 288 KTTLSFDFSSGDSVSTYYPYQLKRNHGAFAIFGWGVLVPLGAIAARYLRHKDPLWYYLHV 347
Query: 204 GIQLVGFILGLAGIVAGVSLYNKIQADVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYR 263
+Q +G+I+G AG+V+G++LYN+ ++ HR AFFL P+KDS+ R
Sbjct: 348 LVQFLGYIIGFAGVVSGIALYNRTYSNFTTHRSLGISVLALGSLQVIAFFLHPNKDSQVR 407
Query: 264 KYWNWYHHWVGRLALFFAAINIVLGIKVGAAGNSWKIGYG 303
K WN YHHW+GR+ +F AAINIVLGI++ SWK+ YG
Sbjct: 408 KCWNQYHHWLGRICIFLAAINIVLGIELSDTNISWKVIYG 447
>Os01g0895300 Cytochrome b561 / ferric reductase transmembrane domain containing
protein
Length = 278
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 113/259 (43%), Gaps = 48/259 (18%)
Query: 90 MVGSSAMVGWVGKTGLSHV-KQFSLRGKTPSQVVADEGFLQ------------------- 129
MVGSSA+ GW G+ V KQ+ L G + D+G L
Sbjct: 1 MVGSSAVAGWSSGNGVGGVAKQYKLGGTSSRSCPPDQGSLSLVAKNTLVVAQSSRIYVAF 60
Query: 130 --------------------SKDHDHDRLTEHQXXXXXXXX-XXXXXXXXXXYPDGLKRA 168
+ + D L +HQ K+
Sbjct: 61 QFTAPQPTPYLIYAVGPSNTNPSGNGDYLAQHQVYTSAAVNYAAGTTSSAGGGAADTKKW 120
Query: 169 HGALNLFAWGVLLPIGAIIARYCRRWDPLWFYLHAGIQLVGFILGLAGIVAGVSLYNKIQ 228
HGA+ WGVL+P+G +ARY ++ DP WFY H +Q VGF+LG+AG+VAG K+
Sbjct: 121 HGAMAGLGWGVLMPVGIALARYFKKHDPFWFYAHISVQGVGFVLGVAGVVAGF----KLN 176
Query: 229 ADVP---AHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFFAAINI 285
DVP H+ AF RP K SK R+YWNWYHH VGR A+ AA NI
Sbjct: 177 DDVPGGDTHQAIGITVLVLGCLQVLAFLARPDKSSKVRRYWNWYHHNVGRAAVACAAANI 236
Query: 286 VLGIKVGAAGNSWKIGYGF 304
+G+ + GN+ + GYG
Sbjct: 237 FIGLNIAHEGNAARAGYGI 255
>Os01g0895200 DOMON related domain containing protein
Length = 437
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 166 KRAHGALNLFAWGVLLPIGAIIARYCRRWDPLWFYLHAGIQLVGFILGLAGIVAGVSLYN 225
KR HG L + +WG ++P G +AR+ +R++PLWFY HAG+Q +GF++G IVAG L
Sbjct: 282 KRRHGVLAVVSWGAMIPAGVAMARFMKRFEPLWFYAHAGVQGLGFVVGAVAIVAGFRLDG 341
Query: 226 KIQADVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFFAAINI 285
+ DV AH+ A RP K++K RKYWNWYHH+VGR A+ N+
Sbjct: 342 --EDDVGAHKAVGVAVLVCACLQVMAVLARPIKEAKARKYWNWYHHYVGRAAVVLGVGNV 399
Query: 286 VLGIKVGAAGNSWKIGYGF 304
G+ + G+ W YG
Sbjct: 400 FYGMSLAKEGDEWSYVYGI 418
>Os03g0194900 DOMON related domain containing protein
Length = 384
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 166 KRAHGALNLFAWGVLLPIGAIIARYCRRW---DPLWFYLHAGIQLVGFILGLAGIVAGVS 222
+ HG LN +WG+L+P+GA+IARY R + DP WFYLH QL G+ILG+AG G+
Sbjct: 200 RNIHGILNAVSWGILIPMGAMIARYLRVFEAADPAWFYLHITCQLSGYILGVAGWALGLK 259
Query: 223 LYNKIQA-DVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFFA 281
L ++ + AHR A LRP K +KYR YWN YHH VG A+ A
Sbjct: 260 LGSESKGITYSAHRNIGIAIFCLATLQVFALLLRPDKKNKYRFYWNIYHHSVGYSAIVLA 319
Query: 282 AINIVLGIKVGAAGNSWKIGY 302
A+NI G+ + + WK Y
Sbjct: 320 AVNIFKGLDILKPASGWKRSY 340
>Os08g0524200 DOMON related domain containing protein
Length = 390
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 166 KRAHGALNLFAWGVLLPIGAIIARYCRRW---DPLWFYLHAGIQLVGFILGLAGIVAGVS 222
K HG LN +WG+LLP+GAI ARY + + DP WFYLH QL+G+ +G++G G+
Sbjct: 205 KNTHGILNAVSWGLLLPMGAIFARYLKTFKSADPAWFYLHVACQLIGYGVGVSGWATGIH 264
Query: 223 LYNKIQA-DVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFFA 281
L N + HR A FLRP KD KYR YWN YHH VG +
Sbjct: 265 LGNLSKGITYSLHRNIGITVFALGTLQIFALFLRPKKDHKYRIYWNAYHHSVGYTIIILG 324
Query: 282 AINIVLGIKVGAAGNSWKIGY 302
+NI G+ + WK GY
Sbjct: 325 IVNIFKGMSILNVEQKWKTGY 345
>Os03g0194300 DOMON related domain containing protein
Length = 417
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 165 LKRAHGALNLFAWGVLLPIGAIIARY---CRRWDPLWFYLHAGIQLVGFILGLAGIVAGV 221
L+ HG+LN +WG LLP+GA +ARY C P WFY HA IQ G+ LG AG G+
Sbjct: 227 LQWTHGSLNALSWGFLLPVGAAVARYLRPCASTGPAWFYAHAAIQATGYALGAAGFALGL 286
Query: 222 SLYNKIQ-ADVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFF 280
+ + HR A RP ++YRKYW YHH VG +
Sbjct: 287 VMGSASPGVTYKLHRGLGIAAATAGSLQTLAMLFRPKTTNRYRKYWKSYHHLVGYGCVVV 346
Query: 281 AAINIVLGIKVGAAGNS-WKIGY 302
+N+ G +V G S WK+GY
Sbjct: 347 GVVNVFQGFEVMGLGASYWKLGY 369
>Os09g0500900 Cytochrome b561 / ferric reductase transmembrane domain containing
protein
Length = 148
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 164 GLKRAHGALNLFAWGVLLPIGAIIARYCRRW---DPLWFYLHAGIQLVGFILGLAGIVAG 220
G ++ HG LN +WG+LLP+GAI+ARY + + DP WFYLH QL+G+ +G+AG G
Sbjct: 46 GHEKIHGLLNAVSWGILLPMGAILARYLKTFRSADPAWFYLHVSCQLIGYGVGVAGWATG 105
Query: 221 VSLYN 225
++L N
Sbjct: 106 INLGN 110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,490,873
Number of extensions: 336908
Number of successful extensions: 969
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 11
Length of query: 335
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 234
Effective length of database: 11,762,187
Effective search space: 2752351758
Effective search space used: 2752351758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)