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Os03g0194300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DOMON related domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.33 (0.035) R2 : 0.655
β1 : -2.14 (0.128) R2dD : 0.226 R2D : -0.0631
β2 : 1.22 (0.0899) R2dC : 0.141 R2C : 0.00543
β3 : -1.78 (0.14) R2dE : 0.138 R2E : -0.136
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.21 (0.451) R2dD*E : 0.071 R2D*E : -0.131
γ1 : -1.73 (0.0774) R2dN8 : 0.563 R2N8 : 0.147
σ : 0.643
deviance : 190.66
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C
peak time of C : 6.32
E
wheather : radiation
threshold : 20
memory length : 1325
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 1.23

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.26 0.641 8.32 -2.16 1.21 -1.78 1.37 4.29 -1.73 6.5 20 1324 11.1 1.23
215.59 0.684 8.31 -2.02 1.18 -1.55 0.792 -- -1.68 6.22 24.05 1282 11.5 1.75
190.66 0.643 8.33 -2.14 1.22 -1.78 -- 4.21 -1.73 6.32 20 1325 11.1 1.23
217.57 0.687 8.29 -1.97 1.2 -1.48 -- -- -1.65 5.9 27.49 1280 11.5 1.75
268.05 0.763 8.33 -2.17 -- -1.87 -- 4.29 -1.71 -- 20 1318 11.1 1.22
274.35 0.777 8.23 -1.81 1.27 -- 1.16 -- -1.37 6.63 -- -- -- --
277.72 0.78 8.23 -1.79 1.28 -- -- -- -1.38 6.56 -- -- -- --
267.85 0.762 8.31 -1.9 -- -1.62 -- -- -1.58 -- 72.06 932 11.3 1.68
316.19 0.828 8.25 -- 1.2 -1.38 -- -- -1.42 6.25 20.03 1281 11.5 1.59
363.03 0.89 8.26 -1.76 -- -- -- -- -1.35 -- -- -- -- --
362.38 0.89 8.19 -- 1.26 -- -- -- -1.18 6.64 -- -- -- --
359.22 0.883 8.26 -- -- -1.49 -- -- -1.29 -- 73.95 940 11.2 1.73
444.82 0.984 8.21 -- -- -- -- -- -1.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 196.71 radiation 20 1440 < th dose dependent rect. 11 1
2 200.03 temperature 20 1440 > th dose independent rect. 6 1
4 204.35 temperature 20 1440 < th dose independent rect. 6 1
7 205.96 radiation 20 1440 < th dose independent rect. 11 1
8 206.31 atmosphere 995 43200 < th dose dependent rect. 11 17
12 206.66 atmosphere 995 43200 < th dose independent rect. 21 18
22 207.84 atmosphere 995 43200 < th dose dependent rect. 12 14
23 207.88 atmosphere 995 43200 > th dose independent rect. 21 18
24 207.88 atmosphere 995 43200 < th dose dependent rect. 13 20
25 207.89 atmosphere 995 43200 > th dose independent rect. 19 20
30 208.25 atmosphere 995 43200 > th dose independent sin 6 NA
33 208.60 atmosphere 995 43200 < th dose independent sin 5 NA
34 208.61 atmosphere 995 43200 < th dose dependent sin 17 NA
52 210.08 temperature 20 1440 > th dose independent rect. 22 2
57 210.31 radiation 1 1440 < th dose independent rect. 10 2
58 210.31 radiation 1 1440 < th dose dependent rect. 10 2
59 210.33 temperature 20 1440 < th dose independent rect. 22 2
60 210.33 temperature 20 1440 < th dose independent rect. 22 12
64 210.42 temperature 20 1440 > th dose independent rect. 22 12
98 211.35 temperature 20 1440 < th dose independent rect. 21 6
109 211.48 radiation 20 4320 > th dose dependent rect. 7 1
138 211.63 temperature 20 1440 > th dose independent sin 9 NA
142 211.67 temperature 20 1440 < th dose independent sin 8 NA
169 211.95 wind 3 43200 < th dose dependent rect. 8 1
173 212.04 radiation 30 4320 < th dose independent rect. 7 1
192 212.32 humidity 90 14400 > th dose dependent rect. 6 1
216 212.56 humidity 90 14400 > th dose dependent rect. 3 16
223 212.67 humidity 90 14400 > th dose dependent rect. 5 5
224 212.67 humidity 90 14400 > th dose dependent rect. 4 10
227 212.72 radiation 30 4320 < th dose independent rect. 2 6
248 212.84 humidity 90 14400 > th dose dependent rect. 3 14
266 212.98 radiation 30 4320 < th dose independent rect. 22 10
289 213.12 temperature 20 1440 < th dose dependent rect. 3 2
292 213.14 radiation 30 4320 < th dose independent rect. 17 15
328 213.57 humidity 90 14400 > th dose dependent sin 2 NA
341 213.69 radiation 10 1440 > th dose independent rect. 11 2
373 213.94 temperature 20 270 < th dose independent rect. 16 19
375 213.95 temperature 20 720 > th dose independent rect. 19 22
407 214.28 radiation 10 1440 < th dose dependent rect. 13 1
443 214.59 wind 3 43200 > th dose independent rect. 8 1
459 214.69 temperature 20 720 > th dose independent rect. 15 21
506 215.01 wind 3 43200 < th dose independent rect. 8 1
573 215.43 radiation 1 1440 > th dose independent rect. 9 5
601 215.58 wind 1 43200 > th dose dependent rect. 8 1
617 215.68 atmosphere 995 43200 < th dose dependent no NA NA
618 215.68 atmosphere 995 43200 < th dose dependent rect. 21 22
641 215.79 wind 3 43200 > th dose independent rect. 7 3
669 215.89 temperature 20 270 > th dose independent rect. 8 23
683 215.95 atmosphere 995 43200 < th dose dependent sin 9 NA
699 216.05 wind 3 43200 < th dose independent rect. 6 4
735 216.24 radiation 1 1440 > th dose independent rect. 13 1
739 216.26 temperature 20 1440 > th dose independent rect. 1 2
763 216.35 humidity 90 14400 > th dose independent rect. 6 1
765 216.35 atmosphere 995 43200 < th dose dependent rect. 1 23
766 216.36 wind 1 14400 > th dose independent rect. 24 2
793 216.44 temperature 20 270 < th dose independent rect. 21 14
816 216.50 radiation 1 1440 < th dose independent rect. 13 1
824 216.52 humidity 90 14400 > th dose independent rect. 2 12
840 216.60 temperature 20 270 > th dose independent sin 9 NA
852 216.64 temperature 20 720 < th dose independent rect. 5 23
853 216.64 humidity 90 14400 > th dose dependent no NA NA
857 216.66 temperature 20 270 > th dose independent no NA NA
865 216.69 temperature 20 270 > th dose independent rect. 11 23
921 216.88 atmosphere 995 43200 < th dose independent rect. 2 9
933 216.90 humidity 90 14400 > th dose dependent rect. 11 23
948 216.96 humidity 90 14400 > th dose dependent rect. 15 23
970 217.02 atmosphere 995 43200 < th dose dependent rect. 21 13
990 217.08 temperature 20 1440 > th dose independent rect. 5 23
993 217.08 humidity 90 14400 > th dose dependent rect. 18 23