Os05g0556400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DOMON related domain containing protein.
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Os05g0556400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DOMON related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1152.95 | 1.6 | 5.69 | -5.6 | 0.758 | 2.89 | 0.933 | 2.35 | -0.677 | 8.73 | 69.15 | 1069 | 6.91 | -- |
| 1147.06 | 1.58 | 5.75 | -5.79 | 1.09 | 3.3 | -0.108 | -- | -0.858 | 9.7 | 71.3 | 970 | 7.14 | -- |
| 1141.95 | 1.57 | 5.72 | -5.57 | 1.01 | 3.15 | -- | 1.84 | -0.802 | 9.93 | 71.82 | 969 | 6.93 | -- |
| 1146.23 | 1.58 | 5.74 | -5.8 | 1.03 | 3.3 | -- | -- | -0.86 | 10 | 71.22 | 972 | 6.99 | -- |
| 1179.02 | 1.6 | 5.72 | -5.58 | -- | 2.89 | -- | 1.81 | -0.694 | -- | 69.5 | 1143 | 6.89 | -- |
| 1467.53 | 1.8 | 5.75 | -5.44 | 1.04 | -- | 3.03 | -- | -0.858 | 4.76 | -- | -- | -- | -- |
| 1491.49 | 1.81 | 5.76 | -5.45 | 1.06 | -- | -- | -- | -0.874 | 4.91 | -- | -- | -- | -- |
| 1183.35 | 1.6 | 5.73 | -5.78 | -- | 2.99 | -- | -- | -0.702 | -- | 69 | 1144 | 6.86 | -- |
| 2008.91 | 2.09 | 5.62 | -- | 0.982 | 2.78 | -- | -- | -0.257 | 10.4 | 74 | 988 | 7.67 | -- |
| 1551.09 | 1.84 | 5.77 | -5.41 | -- | -- | -- | -- | -0.846 | -- | -- | -- | -- | -- |
| 2275.05 | 2.23 | 5.62 | -- | 0.967 | -- | -- | -- | -0.266 | 5.08 | -- | -- | -- | -- |
| 2018.49 | 2.09 | 5.55 | -- | -- | 3.52 | -- | -- | 0.181 | -- | 66 | 2606 | 7.29 | -- |
| 2324.08 | 2.25 | 5.63 | -- | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1168.01 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 12 | 1168.37 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 14 | 1171.22 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 89 | 1182.19 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 94 | 1184.84 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 101 | 1186.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 105 | 1186.92 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 111 | 1187.68 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 124 | 1191.48 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 129 | 1192.37 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 138 | 1194.03 | humidity | 70 | 1440 | < th | dose independent | sin | 12 | NA |
| 160 | 1195.11 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 216 | 1198.78 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 235 | 1200.07 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 251 | 1201.02 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 361 | 1206.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 364 | 1206.35 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 366 | 1206.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 368 | 1206.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 371 | 1206.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 389 | 1207.67 | humidity | 60 | 1440 | > th | dose independent | sin | 14 | NA |
| 432 | 1209.39 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 435 | 1209.61 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 463 | 1210.47 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 477 | 1210.57 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 498 | 1211.28 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 610 | 1213.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 640 | 1214.34 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 655 | 1214.51 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 13 |
| 660 | 1214.63 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 663 | 1214.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 18 |
| 674 | 1215.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 694 | 1215.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 715 | 1216.01 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 732 | 1216.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 752 | 1216.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 9 |