BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0680900 Os01g0680900|AK069379
(335 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G61750.1 | chr3:22857897-22859254 REVERSE LENGTH=399 261 3e-70
AT3G07570.1 | chr3:2418205-2420206 REVERSE LENGTH=370 198 4e-51
AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394 107 1e-23
AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405 104 7e-23
AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396 100 9e-22
AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405 100 1e-21
AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467 99 2e-21
AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403 97 2e-20
AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395 96 2e-20
>AT3G61750.1 | chr3:22857897-22859254 REVERSE LENGTH=399
Length = 398
Score = 261 bits (668), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 175/314 (55%), Gaps = 41/314 (13%)
Query: 32 DDALPPALAGNYSGLACRPVWNNFVLRYAQGKDNVLRVVISSMYSTGWVGMGFSKDGMMV 91
D LPP + + C P+WN FVLRY++ +DNV+ +++S++Y+TGWVG+GFSK+G MV
Sbjct: 43 SDFLPPPYSNISDNMPCTPLWNTFVLRYSENRDNVMTIIVSALYTTGWVGIGFSKEGRMV 102
Query: 92 GSSAMVGWVGKTGLSHVKQFSLRGKTPSQVVADEG------------------------- 126
GSSAM+GW+ K G + +KQ+ L+G QVV D+G
Sbjct: 103 GSSAMIGWISKKGHAKIKQYYLQGTERDQVVPDQGELQLQKVPPVVALHGAMIYLAFQVK 162
Query: 127 -------------FLQSKDHDHDRLTEH--QXXXXXXXXXXXXXXXXXXYPDGLKRAHGA 171
F + RLT+H + K HG
Sbjct: 163 FAVRVPRRAVILAFSTAYPSKLGRLTKHDDKTTVIVDFSKASGATSIKTTTSTEKTKHGV 222
Query: 172 LNLFAWGVLLPIGAIIARYCRRWDPLWFYLHAGIQLVGFILGLAGIVAGVSLYNKIQADV 231
+ + WG LLP+GAI+ARY R DPLW+YLH G Q GFI GLA ++ G+ LYN+IQ D+
Sbjct: 223 MAILGWGFLLPVGAILARYLRHKDPLWYYLHIGFQFTGFIFGLAAVILGIQLYNRIQPDI 282
Query: 232 PAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFFAAINIVLGIKV 291
PAHR AFF RP K++K R+YWNWYHHW+GR++LFF A+NIVLGI++
Sbjct: 283 PAHRGIGIFLLVLSTLQVLAFFARPQKETKMRRYWNWYHHWIGRISLFFGAVNIVLGIRM 342
Query: 292 GA-AGNSWKIGYGF 304
G+ WKIGYGF
Sbjct: 343 ADNGGDGWKIGYGF 356
>AT3G07570.1 | chr3:2418205-2420206 REVERSE LENGTH=370
Length = 369
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 160/326 (49%), Gaps = 52/326 (15%)
Query: 28 TSSCDDALP-PALAGNYSGLACRPVWN--NFVLRYAQGKDNVLRVVISSMYSTGWVGMGF 84
T SC+ LP L N S L C W NF+LRYA+ +N ++S+ S+ ++G+GF
Sbjct: 27 TDSCNSTLPLNDLTFNTSLLQCTEAWTPQNFILRYARTAENTWSFILSAPDSSAFIGIGF 86
Query: 85 SKDGMMVGSSAMVGWVGKTGLS-HVKQFSLRGKTPSQVVADEG----------------- 126
S +G M+GSSA+VGW+ G S VK + L GK+P +V D+G
Sbjct: 87 STNGQMIGSSAIVGWIPSDGGSGTVKPYLLGGKSPGEVNPDQGDLTIVNGSLKIESVSSR 146
Query: 127 -------------------------FLQSKDHDHDRLTEHQXXXXXXXXXXXXXXXXXXY 161
F S D RL EH+
Sbjct: 147 LYMRFQLTATLPRQSLLYAVGPAGFFPSSPDF---RLREHRFVTTTTINYNTGSQSVVKV 203
Query: 162 P--DGLKRAHGALNLFAWGVLLPIGAIIARYCRRWDPLWFYLHAGIQLVGFILGLAGIVA 219
LK+ HG +N+F WG+L+ +GAI+AR+ ++WDP WFY H +Q GF+LGL G++
Sbjct: 204 SPHSKLKKTHGLMNMFGWGILIIVGAIVARHMKQWDPTWFYAHIALQTTGFLLGLTGVIC 263
Query: 220 GVSLYNKIQA-DVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLAL 278
G+ L N+++A +V H+ A RP K SKYRKYWNWYHH +GRL +
Sbjct: 264 GLVLENRLKANNVSKHKGLGITILVMGVLQMLALLARPDKQSKYRKYWNWYHHNIGRLLI 323
Query: 279 FFAAINIVLGIKVGAAGNSWKIGYGF 304
A NI GI + AG SW GYGF
Sbjct: 324 ILAISNIFYGIHLAKAGTSWNGGYGF 349
>AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394
Length = 393
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 166 KRAHGALNLFAWGVLLPIGAIIARYCRRWD---PLWFYLHAGIQLVGFILGLAGIVAGVS 222
+ HG LN +WG+L PIGAIIARY R +D P WFYLH Q +++G+AG G+
Sbjct: 217 RNIHGILNAVSWGILFPIGAIIARYMRVFDSADPAWFYLHVSCQFSAYVIGVAGWATGLK 276
Query: 223 LYNKIQA-DVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFFA 281
L N+ + AHR A LRP KD KYR YWN YHH VG L
Sbjct: 277 LGNESEGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDHKYRFYWNIYHHGVGYAILTLG 336
Query: 282 AINIVLGIKVGAAGNSWKIGY 302
IN+ G+ + +++K Y
Sbjct: 337 IINVFKGLNILKPQDTYKTAY 357
>AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405
Length = 404
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 166 KRAHGALNLFAWGVLLPIGAIIARYCRRW-DPLWFYLHAGIQLVGFILGLAGIVAGVSLY 224
+ HG LN +WGVL+P+GA++ARY + + DP WFYLH Q+ G+++G+AG G+ L
Sbjct: 208 RNTHGVLNAVSWGVLMPMGAMMARYMKVFADPTWFYLHIAFQVSGYVIGVAGWATGIKLG 267
Query: 225 NKIQ-ADVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFFAAI 283
N HR A +RP D KYR YWN YHH VG + + +
Sbjct: 268 NDSPGTSYSTHRNLGIALFTFATLQVFALLVRPKPDHKYRTYWNVYHHTVGYTTIILSIV 327
Query: 284 NIVLGIKVGAAGNSWKIGY 302
NI G + + W+ Y
Sbjct: 328 NIFKGFDILDPEDKWRWAY 346
>AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396
Length = 395
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 166 KRAHGALNLFAWGVLLPIGAIIARY---CRRWDPLWFYLHAGIQLVGFILGLAGIVAGVS 222
+ HG LN +WG+++PIGAIIARY + DP WFYLH Q +I+G+AG G+
Sbjct: 208 RNIHGILNGVSWGIMMPIGAIIARYLKVSKSADPAWFYLHVFCQSSAYIIGVAGWATGLK 267
Query: 223 LYNKIQA-DVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFFA 281
L N+ HR A FLRP + KYR YWN YHH VG + A
Sbjct: 268 LGNESAGIQFTFHRAVGIALFCLATIQVFAMFLRPKPEHKYRVYWNIYHHTVGYSVIILA 327
Query: 282 AINIVLGIKVGAAGNSWKIGY 302
+N+ G+ + + W+ Y
Sbjct: 328 VVNVFKGLDILSPEKQWRNAY 348
>AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405
Length = 404
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Query: 164 GLKRAHGALNLFAWGVLLPIGAIIARYCRRWD---PLWFYLHAGIQLVGFILGLAGIVAG 220
LK HG +N +WG LLP GA+ ARY R+ P WFY+HA IQL GF+LG G G
Sbjct: 214 ALKVTHGVVNAISWGFLLPAGAVTARYLRQMQSIGPTWFYIHAAIQLTGFLLGTIGFSIG 273
Query: 221 VSL-YNKIQADVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALF 279
+ L +N HR A RP +K+R+YW YHH+VG +
Sbjct: 274 IVLGHNSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYACVV 333
Query: 280 FAAINIVLGIKVGAAGNSW-KIGY 302
+N+ G +V G S+ K+GY
Sbjct: 334 MGVVNVFQGFEVLREGRSYAKLGY 357
>AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467
Length = 466
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 165 LKRAHGALNLFAWGVLLPIGAIIARYCRRW---DPLWFYLHAGIQLVGFILGL-AGIVAG 220
+K+ H +N +WG+L+PIG + ARY + + DP WFY+H Q G+ GL G+
Sbjct: 216 VKQIHAIVNALSWGILMPIGVMAARYMKNYEVLDPTWFYIHVVCQTTGYFSGLIGGLGTA 275
Query: 221 VSLYNKIQADVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALFF 280
+ + H + RP+KD KYRKYWNWYHH +G + +
Sbjct: 276 IYMARHTGMRTTLHTVIGLLLFALGFLQILSLKARPNKDHKYRKYWNWYHHTMGYIVIVL 335
Query: 281 AAINIVLGIKVGAAGNSWKIGY 302
+ NI G+ + G+ WKI Y
Sbjct: 336 SIYNIYKGLSILQPGSIWKIAY 357
>AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403
Length = 402
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 12/145 (8%)
Query: 166 KRAHGALNLFAWGVLLPIGAIIARYCR---RWDPLWFYLHAGIQLVGFILGLAGIVAGVS 222
+ HG LN +WG+++P+GAIIARY R DP WFY+H Q +I+G+AG G+
Sbjct: 216 RNIHGILNGVSWGIMMPLGAIIARYLRVAKSADPAWFYIHVFCQASAYIIGVAGWATGL- 274
Query: 223 LYNKIQADVP-----AHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLA 277
K+ D P HR A FLRP + K+R YWN YHH +G
Sbjct: 275 ---KLGGDSPGIQYSTHRAIGIALFSLATVQVFAMFLRPKPEHKHRLYWNIYHHTIGYTI 331
Query: 278 LFFAAINIVLGIKVGAAGNSWKIGY 302
+ +N+ G+ + + WK Y
Sbjct: 332 IILGVVNVFKGLGILSPKKQWKNAY 356
>AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395
Length = 394
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 166 KRAHGALNLFAWGVLLPIGAIIARYCRRW---DPLWFYLHAGIQLVGFILGLAGIVAGVS 222
+ HG LN +WG+L PIGA+IARY R + DP WFYLH Q +++G+AG G+
Sbjct: 218 RNIHGILNAVSWGLLFPIGAMIARYMRIFESADPAWFYLHVSCQFSAYVIGVAGWATGLK 277
Query: 223 LYNK---IQADVPAHRXXXXXXXXXXXXXXXAFFLRPHKDSKYRKYWNWYHHWVGRLALF 279
L ++ IQ + HR A LRP KD K+R WN YHH VG L
Sbjct: 278 LGSESKGIQYN--THRNIGICLFSIATLQMFAMLLRPRKDHKFRFVWNIYHHGVGYSILI 335
Query: 280 FAAINIVLGIKVGAAGNSWKIGY 302
IN+ G+ + +++K Y
Sbjct: 336 LGIINVFKGLSILNPKHTYKTAY 358
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,985,560
Number of extensions: 213484
Number of successful extensions: 447
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 11
Length of query: 335
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,392,385
Effective search space: 1980602860
Effective search space used: 1980602860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)