Os01g0893700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DOMON related domain containing protein.
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Os01g0893700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DOMON related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 223.61 | 0.703 | 3.49 | -0.469 | 0.144 | -10.7 | -0.742 | -27.1 | -0.228 | 11.8 | 8.3 | 361 | -- | -- |
| 285.15 | 0.793 | 3.38 | -0.971 | 0.186 | -1.68 | -0.305 | -- | -0.277 | 15.7 | 8.3 | 361 | -- | -- |
| 225.81 | 0.7 | 3.49 | -0.5 | 0.16 | -10.7 | -- | -27.1 | -0.235 | 12.8 | 8.301 | 360 | -- | -- |
| 243.43 | 0.727 | 3.38 | -0.863 | 0.145 | -3.28 | -- | -- | -0.155 | 14.5 | 9.4 | 618 | -- | -- |
| 227.29 | 0.702 | 3.49 | -0.526 | -- | -10.4 | -- | -25.8 | -0.237 | -- | 8.207 | 360 | -- | -- |
| 303.47 | 0.817 | 3.39 | -1.11 | 0.272 | -- | -0.628 | -- | -0.335 | 15.5 | -- | -- | -- | -- |
| 304.68 | 0.817 | 3.4 | -1.12 | 0.27 | -- | -- | -- | -0.338 | 15.7 | -- | -- | -- | -- |
| 244.56 | 0.728 | 3.39 | -0.805 | -- | -3.53 | -- | -- | -0.244 | -- | 9.299 | 651 | -- | -- |
| 258.65 | 0.749 | 3.32 | -- | 0.186 | -3.85 | -- | -- | -0.15 | 14.3 | 9.293 | 662 | -- | -- |
| 308.71 | 0.821 | 3.4 | -1.13 | -- | -- | -- | -- | -0.345 | -- | -- | -- | -- | -- |
| 337.92 | 0.86 | 3.37 | -- | 0.292 | -- | -- | -- | -0.213 | 15.7 | -- | -- | -- | -- |
| 260.05 | 0.751 | 3.34 | -- | -- | -4.45 | -- | -- | -0.118 | -- | 9.228 | 592 | -- | -- |
| 342.66 | 0.864 | 3.37 | -- | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.98 | wind | 9 | 270 | > th | dose dependent | sin | 10 | NA |
| 2 | 222.76 | wind | 9 | 270 | > th | dose independent | sin | 10 | NA |
| 3 | 225.74 | wind | 9 | 270 | < th | dose independent | sin | 10 | NA |
| 4 | 226.45 | wind | 7 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 9 | 228.21 | wind | 7 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 13 | 229.11 | wind | 9 | 720 | > th | dose dependent | sin | 5 | NA |
| 15 | 229.30 | wind | 7 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 26 | 229.57 | wind | 9 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 39 | 229.73 | wind | 9 | 720 | > th | dose independent | sin | 5 | NA |
| 67 | 230.23 | wind | 7 | 270 | > th | dose dependent | no | NA | NA |
| 81 | 230.37 | wind | 7 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 106 | 230.76 | wind | 9 | 720 | > th | dose independent | rect. | 21 | 16 |
| 107 | 230.76 | wind | 9 | 720 | > th | dose independent | rect. | 19 | 18 |
| 120 | 231.03 | wind | 9 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 128 | 231.23 | wind | 7 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 134 | 231.57 | wind | 9 | 270 | > th | dose independent | rect. | 15 | 21 |
| 136 | 231.59 | wind | 9 | 720 | > th | dose independent | rect. | 9 | 8 |
| 149 | 231.86 | wind | 7 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 153 | 232.07 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 12 |
| 161 | 232.31 | wind | 9 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 169 | 232.47 | wind | 9 | 720 | > th | dose independent | rect. | 9 | 4 |
| 185 | 232.59 | wind | 9 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 187 | 232.62 | wind | 9 | 720 | < th | dose independent | sin | 6 | NA |
| 193 | 232.75 | wind | 9 | 720 | < th | dose independent | sin | 4 | NA |
| 197 | 232.92 | wind | 9 | 720 | > th | dose independent | rect. | 19 | 21 |
| 219 | 233.75 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 231 | 234.00 | wind | 9 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 267 | 235.10 | wind | 9 | 270 | < th | dose independent | no | NA | NA |
| 286 | 235.69 | wind | 7 | 270 | > th | dose dependent | sin | 18 | NA |
| 307 | 236.08 | wind | 9 | 270 | > th | dose independent | no | NA | NA |
| 308 | 236.08 | wind | 9 | 270 | > th | dose independent | rect. | 9 | 17 |
| 323 | 236.08 | wind | 9 | 270 | > th | dose independent | rect. | 1 | 22 |
| 354 | 236.30 | wind | 9 | 270 | > th | dose independent | rect. | 9 | 14 |
| 378 | 236.34 | wind | 7 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 408 | 236.90 | wind | 9 | 270 | > th | dose independent | rect. | 21 | 23 |
| 428 | 237.57 | wind | 9 | 270 | > th | dose independent | sin | 18 | NA |
| 584 | 238.57 | wind | 9 | 270 | < th | dose independent | sin | 17 | NA |
| 676 | 239.57 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 787 | 240.21 | wind | 9 | 270 | < th | dose independent | sin | 15 | NA |
| 866 | 240.80 | wind | 9 | 10 | > th | dose independent | sin | 16 | NA |