BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0893700 Os01g0893700|Os01g0893700
         (300 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07570.1  | chr3:2418205-2420206 REVERSE LENGTH=370            110   1e-24
AT3G61750.1  | chr3:22857897-22859254 REVERSE LENGTH=399           70   2e-12

>AT3G07570.1 | chr3:2418205-2420206 REVERSE LENGTH=370
          Length = 369

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 11/163 (6%)

Query: 31  CTAALSLGNLISFNTTGLNCFQAWSSQGFILRFGKDASSAGSNSVWNFVLSAPDSGGYIA 90
           C + L L +L +FNT+ L C +AW+ Q FILR+ + A +      W+F+LSAPDS  +I 
Sbjct: 30  CNSTLPLNDL-TFNTSLLQCTEAWTPQNFILRYARTAENT-----WSFILSAPDSSAFIG 83

Query: 91  VGFSPNGKMVGGSXXXX-XXXXXXXXXXRQYYLGGTTSSLCPPDQGKLSLSRGAAAPTIV 149
           +GFS NG+M+G S               + Y LGG +     PDQG L++  G+    I 
Sbjct: 84  IGFSTNGQMIGSSAIVGWIPSDGGSGTVKPYLLGGKSPGEVNPDQGDLTIVNGSLK--IE 141

Query: 150 SKGSRLYLAFQLSGQ-PLTNVIYAVGPAGTLP-GPSGLLAQHK 190
           S  SRLY+ FQL+   P  +++YAVGPAG  P  P   L +H+
Sbjct: 142 SVSSRLYMRFQLTATLPRQSLLYAVGPAGFFPSSPDFRLREHR 184



>AT3G61750.1 | chr3:22857897-22859254 REVERSE LENGTH=399
          Length = 398

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 45  TTGLNCFQAWSSQGFILRFGKDASSAGSNSVWNFVLSAPDSGGYIAVGFSPNGKMVGGSX 104
           +  + C   W++  F+LR+     S   ++V   ++SA  + G++ +GFS  G+MVG S 
Sbjct: 54  SDNMPCTPLWNT--FVLRY-----SENRDNVMTIIVSALYTTGWVGIGFSKEGRMVGSSA 106

Query: 105 XXXXXXXXXXXXXRQYYLGGTTSSLCPPDQGKLSLSRGAAAPTIVSKGSRLYLAFQLS-- 162
                        +QYYL GT      PDQG+L L +    P +   G+ +YLAFQ+   
Sbjct: 107 MIGWISKKGHAKIKQYYLQGTERDQVVPDQGELQLQK--VPPVVALHGAMIYLAFQVKFA 164

Query: 163 -GQPLTNVIYAVGPAGTLPGPSGLLAQHKD 191
              P   VI A   A   P   G L +H D
Sbjct: 165 VRVPRRAVILAFSTA--YPSKLGRLTKHDD 192



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,133,876
Number of extensions: 135829
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)