BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0893700 Os01g0893700|Os01g0893700
(300 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0893700 DOMON related domain containing protein 303 1e-82
Os01g0895200 DOMON related domain containing protein 232 3e-61
Os01g0895300 Cytochrome b561 / ferric reductase transmembra... 69 4e-12
>Os01g0893700 DOMON related domain containing protein
Length = 300
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/194 (80%), Positives = 156/194 (80%)
Query: 1 MRQWHHXXXXXXXXXXXXXXXXXXXXXXXXCTAALSLGNLISFNTTGLNCFQAWSSQGFI 60
MRQWHH CTAALSLGNLISFNTTGLNCFQAWSSQGFI
Sbjct: 1 MRQWHHLLLVLCFVGSSSLLLVSSQTTSDSCTAALSLGNLISFNTTGLNCFQAWSSQGFI 60
Query: 61 LRFGKDASSAGSNSVWNFVLSAPDSGGYIAVGFSPNGKMVGGSXXXXXXXXXXXXXXRQY 120
LRFGKDASSAGSNSVWNFVLSAPDSGGYIAVGFSPNGKMVGGS RQY
Sbjct: 61 LRFGKDASSAGSNSVWNFVLSAPDSGGYIAVGFSPNGKMVGGSAVAGWATPGAAGTARQY 120
Query: 121 YLGGTTSSLCPPDQGKLSLSRGAAAPTIVSKGSRLYLAFQLSGQPLTNVIYAVGPAGTLP 180
YLGGTTSSLCPPDQGKLSLSRGAAAPTIVSKGSRLYLAFQLSGQPLTNVIYAVGPAGTLP
Sbjct: 121 YLGGTTSSLCPPDQGKLSLSRGAAAPTIVSKGSRLYLAFQLSGQPLTNVIYAVGPAGTLP 180
Query: 181 GPSGLLAQHKDMAA 194
GPSGLLAQHKDMAA
Sbjct: 181 GPSGLLAQHKDMAA 194
>Os01g0895200 DOMON related domain containing protein
Length = 437
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/162 (73%), Positives = 133/162 (82%), Gaps = 2/162 (1%)
Query: 31 CTAALSLGNLISFNTTGLNCFQAWSSQGFILRFGKDASSAGSNSVWNFVLSAPDSGGYIA 90
CTAAL++G+LI FNTTGLNCFQAWSSQ FILRFG+DAS AGSN VWNFVLSAPD+GGYI+
Sbjct: 39 CTAALAVGDLIPFNTTGLNCFQAWSSQDFILRFGQDAS-AGSN-VWNFVLSAPDAGGYIS 96
Query: 91 VGFSPNGKMVGGSXXXXXXXXXXXXXXRQYYLGGTTSSLCPPDQGKLSLSRGAAAPTIVS 150
VGFSPNG MVG S RQYYLGGT+S CPP QGKLSLS GAAAPTIVS
Sbjct: 97 VGFSPNGGMVGSSAVAGWVASGGVGTARQYYLGGTSSRSCPPGQGKLSLSTGAAAPTIVS 156
Query: 151 KGSRLYLAFQLSGQPLTNVIYAVGPAGTLPGPSGLLAQHKDM 192
+GSRLYLAFQ SGQP T+++YAVGPAG+LPG +G LAQH+ M
Sbjct: 157 QGSRLYLAFQFSGQPRTDLVYAVGPAGSLPGTNGFLAQHQYM 198
>Os01g0895300 Cytochrome b561 / ferric reductase transmembrane domain containing
protein
Length = 278
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 118 RQYYLGGTTSSLCPPDQGKLSLSRGAAAPTIVSKGSRLYLAFQLSG-QPLTNVIYAVGPA 176
+QY LGGT+S CPPDQG LSL A +V++ SR+Y+AFQ + QP +IYAVGP+
Sbjct: 21 KQYKLGGTSSRSCPPDQGSLSLV--AKNTLVVAQSSRIYVAFQFTAPQPTPYLIYAVGPS 78
Query: 177 GTLPGPSG-LLAQHK 190
T P +G LAQH+
Sbjct: 79 NTNPSGNGDYLAQHQ 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,008,478
Number of extensions: 251450
Number of successful extensions: 444
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)