BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0882300 Os01g0882300|AK102845
(360 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0882300 Protein of unknown function DUF803 family protein 617 e-177
Os05g0424800 Similar to AER274Wp 538 e-153
AK073285 439 e-123
Os05g0513400 Protein of unknown function DUF803 family protein 350 7e-97
Os04g0373000 Protein of unknown function DUF803 family protein 343 2e-94
Os01g0873700 Protein of unknown function DUF803 family protein 335 4e-92
Os05g0430700 Protein of unknown function DUF803 family protein 333 1e-91
Os06g0715700 Protein of unknown function DUF803 family protein 318 3e-87
Os02g0498300 Protein of unknown function DUF803 family protein 300 2e-81
Os11g0197400 Protein of unknown function DUF803 family protein 162 3e-40
>Os01g0882300 Protein of unknown function DUF803 family protein
Length = 360
Score = 617 bits (1592), Expect = e-177, Method: Compositional matrix adjust.
Identities = 310/343 (90%), Positives = 310/343 (90%)
Query: 18 WVEGMSADNIKGLVLALSSSFFIGASFIVXXXXXXXXXXXXXXXXXXXXXXLYEPLWWAG 77
WVEGMSADNIKGLVLALSSSFFIGASFIV LYEPLWWAG
Sbjct: 18 WVEGMSADNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGVRAGVGGYSYLYEPLWWAG 77
Query: 78 MITMIVGEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVG 137
MITMIVGEV ILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVG
Sbjct: 78 MITMIVGEVANFAAYAFAPAILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVG 137
Query: 138 STTIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYI 197
STTIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYI
Sbjct: 138 STTIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYI 197
Query: 198 GVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDT 257
GVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDT
Sbjct: 198 GVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDT 257
Query: 258 FNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKDM 317
FNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKDM
Sbjct: 258 FNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKDM 317
Query: 318 VDGLPPTLPIRIPKHDEDGYAAEGIPLRSAAEGLPLRSPRAAE 360
VDGLPPTLPIRIPKHDEDGYAAEGIPLRSAAEGLPLRSPRAAE
Sbjct: 318 VDGLPPTLPIRIPKHDEDGYAAEGIPLRSAAEGLPLRSPRAAE 360
>Os05g0424800 Similar to AER274Wp
Length = 358
Score = 538 bits (1385), Expect = e-153, Method: Compositional matrix adjust.
Identities = 274/344 (79%), Positives = 293/344 (85%), Gaps = 1/344 (0%)
Query: 18 WVEGMSADNIKGLVLALSSSFFIGASFIVXXXXXXXXXXXXXXXXXXXXXXLYEPLWWAG 77
WVEGMSADN+KGL+LALSSS FIGASFIV L EPLWWAG
Sbjct: 9 WVEGMSADNVKGLLLALSSSLFIGASFIVKKKGLKKAGASGVRAGVGGYSYLLEPLWWAG 68
Query: 78 MITMIVGEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVG 137
M MIVGE+ ILVTPLGALSIIISAVLA I+L+EKLHIFGILGC+LCVVG
Sbjct: 69 MTAMIVGEIANFAAYAFAPAILVTPLGALSIIISAVLAHIILREKLHIFGILGCILCVVG 128
Query: 138 STTIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYI 197
ST+IVLHAP ER+I+SVAEVW LATEPAFL YA VLAA FVLIF F+PQYGQTHIMVYI
Sbjct: 129 STSIVLHAPPERQIESVAEVWDLATEPAFLLYAAIVLAAAFVLIFHFVPQYGQTHIMVYI 188
Query: 198 GVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDT 257
GVCSLVGSLSVMSVKALGIALKLTFSGMNQL+YPQ W+F + VVACI+TQMNYLNKALDT
Sbjct: 189 GVCSLVGSLSVMSVKALGIALKLTFSGMNQLVYPQMWVFLLFVVACIVTQMNYLNKALDT 248
Query: 258 FNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKDM 317
FNTAVVSPIYYTMFTSLTILASVIMFKDWDRQ+PTQIVTEMCGFVTILSGTFLLHKTKDM
Sbjct: 249 FNTAVVSPIYYTMFTSLTILASVIMFKDWDRQDPTQIVTEMCGFVTILSGTFLLHKTKDM 308
Query: 318 VDGLPPTLPIRIPKH-DEDGYAAEGIPLRSAAEGLPLRSPRAAE 360
VDGLPP LPIR+PKH +EDGYAAEGIPLRSAA+G+PLRSPRA E
Sbjct: 309 VDGLPPNLPIRLPKHAEEDGYAAEGIPLRSAADGIPLRSPRATE 352
>AK073285
Length = 361
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/297 (74%), Positives = 242/297 (81%), Gaps = 15/297 (5%)
Query: 69 LYEPLWWAGMITMIVGEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGI 128
LYEPLWW GMITM+VGEV ILVTPLGALSIIISA+LA ML++KLHIFGI
Sbjct: 70 LYEPLWWVGMITMVVGEVANFAAYAFAPAILVTPLGALSIIISAILAHFMLRKKLHIFGI 129
Query: 129 LGCVLCVVGSTTIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQY 188
LGC+LCVVGSTTIVLHAP EREI+SV EVW LATEPAF+FY VLA +L+ RF+P Y
Sbjct: 130 LGCILCVVGSTTIVLHAPAEREIESVTEVWDLATEPAFMFYVSVVLAMVAILVCRFVPLY 189
Query: 189 GQTHIMVYIGVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQM 248
GQTH+MVYIGVCSLVGS+SVMSVKALGIALKLTF G NQLIYPQTW FT+VV++CI+TQM
Sbjct: 190 GQTHVMVYIGVCSLVGSISVMSVKALGIALKLTFCGTNQLIYPQTWAFTLVVLSCIVTQM 249
Query: 249 NYLNKALDTFNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGT 308
NYLNKALDTFNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTE CGFVTILSGT
Sbjct: 250 NYLNKALDTFNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEACGFVTILSGT 309
Query: 309 FLLHKTKDMVDGLPPTLPIRIP---------KHDEDGYAAEGIPLRSAAEGLPLRSP 356
FLLHKTKDM DGL + R+P + DE+ EGIPLRS+ RSP
Sbjct: 310 FLLHKTKDMADGLSTSSSFRLPTSSSFRFSKQTDEE---CEGIPLRSSES---FRSP 360
>Os05g0513400 Protein of unknown function DUF803 family protein
Length = 354
Score = 350 bits (899), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 185/330 (56%), Positives = 228/330 (69%), Gaps = 14/330 (4%)
Query: 20 EGMSADNIKGLVLALSSSFFIGASFIVXXXXXXXXXXXXXXXXXXX-XXXLYEPLWWAGM 78
+ +S DN+KG+VLAL SS FIGASFI+ L EPLWW GM
Sbjct: 9 QELSTDNVKGIVLALLSSGFIGASFIIKKKGLRRAAVASGIRAGVGGYSYLLEPLWWVGM 68
Query: 79 ITMIVGEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVGS 138
ITMIVGEV +LVTPLGALSII+SAVLA +L E+LH G+LGCV+C+ GS
Sbjct: 69 ITMIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLAHFILNERLHALGVLGCVMCIAGS 128
Query: 139 TTIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYIG 198
IV+HAPQE+EI SV E+W +A +PAFL Y +V+ FVL+F F P YGQ+++++Y
Sbjct: 129 VVIVIHAPQEQEITSVREIWNMAIQPAFLLYVASVIVVVFVLVFHFSPLYGQSNVLIYTA 188
Query: 199 VCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDTF 258
+CSL+GSLSVMSVKALG +LKLTF G NQL+YP+TW F ++V C+LTQMNYLNKALDTF
Sbjct: 189 ICSLMGSLSVMSVKALGTSLKLTFEGTNQLVYPETWFFVLIVATCVLTQMNYLNKALDTF 248
Query: 259 NTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKD-- 316
NTA+VSPIYY MFT+LTILASVIMFKDW Q+ I +E+CG + +LSGT LLH TKD
Sbjct: 249 NTAIVSPIYYVMFTTLTILASVIMFKDWSGQSLGSITSEICGLIVVLSGTILLHVTKDYE 308
Query: 317 -------MVDGLPPTLPIRIP----KHDED 335
+ L P+L R+ KH ED
Sbjct: 309 RIPQSRSIYAPLSPSLTARLNGDLLKHVED 338
>Os04g0373000 Protein of unknown function DUF803 family protein
Length = 317
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/307 (56%), Positives = 219/307 (71%)
Query: 22 MSADNIKGLVLALSSSFFIGASFIVXXXXXXXXXXXXXXXXXXXXXXLYEPLWWAGMITM 81
MS DN++G LA SSS FIG+SF++ LYEPLWW GM M
Sbjct: 3 MSIDNVRGFALATSSSAFIGSSFVIKKIGLKKAGDAGVRAGSGGYSYLYEPLWWIGMTAM 62
Query: 82 IVGEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVGSTTI 141
I+GEV ILVTPLGALSII SAVLA +LKE+LH+FGI+GC+LCVVGS I
Sbjct: 63 ILGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKERLHMFGIVGCILCVVGSVGI 122
Query: 142 VLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYIGVCS 201
VLHAP+E++IDSV E+W LAT+P F+ Y+ + +LIF + + Q ++ YI +CS
Sbjct: 123 VLHAPKEKKIDSVNEIWHLATQPGFIVYSCMAVVVALILIFWVVHRTEQRKMLAYIAICS 182
Query: 202 LVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDTFNTA 261
L+GSL+V+SVKA+ IALKL+F+G+NQ IY TW F +VVV C L Q+NYLNKALD+FNTA
Sbjct: 183 LMGSLTVISVKAVAIALKLSFNGVNQFIYVPTWFFIVVVVICCLVQLNYLNKALDSFNTA 242
Query: 262 VVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKDMVDGL 321
VVSP+YY MFT LTI+A++IM+KDW QN TQI TE+CGFVTI++GTFLLHKT+DM +
Sbjct: 243 VVSPVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKTRDMGNEQ 302
Query: 322 PPTLPIR 328
+ +R
Sbjct: 303 SESSSLR 309
>Os01g0873700 Protein of unknown function DUF803 family protein
Length = 363
Score = 335 bits (858), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 169/325 (52%), Positives = 217/325 (66%), Gaps = 8/325 (2%)
Query: 24 ADNIKGLVLALSSSFFIGASFIVXXXXXXXXXXXXXXXXXXXXXXLYEPLWWAGMITMIV 83
A N+KG +LA++SS FIG SFIV L EPLWW GM+TM+V
Sbjct: 21 AANLKGSLLAVASSAFIGVSFIVKKKGLLRAGAAGSRAGVGGYGYLLEPLWWVGMVTMLV 80
Query: 84 GEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVGSTTIVL 143
GE+ +LVTPLGALSII+SAVLA L EKL G+LGCVLC+VGST I+L
Sbjct: 81 GEIANFIAYMFAPAVLVTPLGALSIIVSAVLAHFTLNEKLQRVGVLGCVLCIVGSTVIIL 140
Query: 144 HAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYIGVCSLV 203
HAPQER SV E+W LA +P FL YA +A + L+ P+YGQ +IMVY+G+CS++
Sbjct: 141 HAPQERTPSSVDEIWHLAIQPDFLCYATAAVAVSLFLMIYCAPRYGQMNIMVYVGICSVI 200
Query: 204 GSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDTFNTAVV 263
GSL+VMS+KA+GIA+KLT G+NQ Y QTW+F ++ + CI Q+ YLNKALDTFN AVV
Sbjct: 201 GSLTVMSIKAVGIAIKLTIEGINQAGYFQTWLFAVISITCIAVQLVYLNKALDTFNAAVV 260
Query: 264 SPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTK-------- 315
SPIYY MFT+LTILAS IMFKDW Q+ ++I +E+CGF+T+L+GT +LH T+
Sbjct: 261 SPIYYAMFTTLTILASAIMFKDWSGQSASKIASEICGFLTVLAGTLVLHSTREPDQTLSA 320
Query: 316 DMVDGLPPTLPIRIPKHDEDGYAAE 340
D+ LPP + I + + G E
Sbjct: 321 DLYAPLPPKIYWHIQGNGDIGKQKE 345
>Os05g0430700 Protein of unknown function DUF803 family protein
Length = 355
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/307 (54%), Positives = 212/307 (69%)
Query: 24 ADNIKGLVLALSSSFFIGASFIVXXXXXXXXXXXXXXXXXXXXXXLYEPLWWAGMITMIV 83
A N+KG +LA++SS FIG SFIV L EPLWW GMITM++
Sbjct: 14 AANLKGSLLAVASSAFIGVSFIVKKKGLRRAGAAGPRAGVGGYGYLLEPLWWVGMITMLI 73
Query: 84 GEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVGSTTIVL 143
GE+ +LVTPLGALSII+SAVLA +L EKL G+LGCVLC+VGST I+L
Sbjct: 74 GEIANFVAYMFAPAVLVTPLGALSIIVSAVLAHFILNEKLQRMGVLGCVLCIVGSTVIIL 133
Query: 144 HAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYIGVCSLV 203
HAP+E SV ++W LAT+PAFL Y L + +L+ P+YGQT+I VYIG+CS++
Sbjct: 134 HAPEEETPSSVEQIWHLATQPAFLCYVAFALVVSLILMAHCAPRYGQTNIAVYIGICSVI 193
Query: 204 GSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDTFNTAVV 263
GSL+VMS+KA+GIA+KLT G+NQ Y QTW+F V CI+ Q+ YLNKALDTFNTAVV
Sbjct: 194 GSLTVMSIKAVGIAIKLTIEGINQAGYFQTWLFATVSAICIIIQLIYLNKALDTFNTAVV 253
Query: 264 SPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKDMVDGLPP 323
SPIYY MFTSLTILAS IMFKDW Q+ + I +E+CGF+T+LSGT +LH T++ + P
Sbjct: 254 SPIYYAMFTSLTILASAIMFKDWSGQSISSIASEICGFLTVLSGTVVLHSTREYDQTISP 313
Query: 324 TLPIRIP 330
L +P
Sbjct: 314 DLYTPLP 320
>Os06g0715700 Protein of unknown function DUF803 family protein
Length = 344
Score = 318 bits (816), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 159/303 (52%), Positives = 210/303 (69%)
Query: 24 ADNIKGLVLALSSSFFIGASFIVXXXXXXXXXXXXXXXXXXXXXXLYEPLWWAGMITMIV 83
+DN GL LA++SS FIGASFI+ L EPLWWAGM+TM++
Sbjct: 4 SDNTVGLSLAVASSAFIGASFILKKIGLIRAGKGGVRAGGGGYTYLLEPLWWAGMMTMLL 63
Query: 84 GEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVGSTTIVL 143
GE+ +LVTPLGALSII+S+ LA +LKE+L G+LGCV C+VGS +V+
Sbjct: 64 GEIANFVAYTFAPAVLVTPLGALSIIVSSFLAHFVLKERLEKLGVLGCVSCIVGSVIVVI 123
Query: 144 HAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYIGVCSLV 203
HAPQE +SV E+W LA +P FL YAV L L+ F P+YGQT+IM+Y+G+CS +
Sbjct: 124 HAPQEHMPNSVEEIWNLAIQPGFLTYAVATLVVVAALVLFFEPRYGQTNIMIYLGICSSM 183
Query: 204 GSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDTFNTAVV 263
GSL+V+S+KA+G+A+KLT GMNQ+ YP TW+F I+ + C+++Q+NYLNKALDTF+ AVV
Sbjct: 184 GSLTVVSIKAIGVAIKLTLDGMNQVAYPHTWLFVIIAIICVVSQINYLNKALDTFDLAVV 243
Query: 264 SPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKDMVDGLPP 323
SPIYY MFT+LTI+AS IMFKDW Q+ + I +E CG +TIL+GT +LH K+ G
Sbjct: 244 SPIYYVMFTTLTIVASGIMFKDWAGQSFSSIASEFCGLITILTGTIMLHTAKEEETGSSA 303
Query: 324 TLP 326
LP
Sbjct: 304 ALP 306
>Os02g0498300 Protein of unknown function DUF803 family protein
Length = 268
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/249 (61%), Positives = 189/249 (75%), Gaps = 2/249 (0%)
Query: 78 MITMIVGEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVG 137
MITMI+GEV +LVTPLGALSII SAVLA +LKEKLH+FG++GC+LCVVG
Sbjct: 1 MITMILGEVANFAAYAFAPAVLVTPLGALSIIFSAVLAHFVLKEKLHMFGVVGCILCVVG 60
Query: 138 STTIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYI 197
S IVLHAP+EREIDS+ E+W LATEP F+ Y+ + + LIF + G ++VYI
Sbjct: 61 SVGIVLHAPKEREIDSIDEIWHLATEPGFIVYSCVAVVSVLFLIFWVAERSGHRKMLVYI 120
Query: 198 GVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWMFTIVVVACILTQMNYLNKALDT 257
+CS +GSL+V+SVKA+ IALKL+F G NQ IY QTW F +VV+ C L Q+NYLNKALD+
Sbjct: 121 AICSTMGSLTVISVKAVAIALKLSFGGSNQFIYIQTWFFIVVVIVCCLVQLNYLNKALDS 180
Query: 258 FNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKDM 317
FNTAVVSP+YY MFT LTI A++IM+KD +N TQI T++CGFVTI++GTFLLHKT+DM
Sbjct: 181 FNTAVVSPVYYVMFTILTIFANMIMYKDSFSRNATQIATQLCGFVTIVAGTFLLHKTRDM 240
Query: 318 VDGLPPTLP 326
G P LP
Sbjct: 241 --GNEPPLP 247
>Os11g0197400 Protein of unknown function DUF803 family protein
Length = 139
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/129 (70%), Positives = 102/129 (79%)
Query: 80 TMIVGEVXXXXXXXXXXXILVTPLGALSIIISAVLADIMLKEKLHIFGILGCVLCVVGST 139
T+IVGE+ ILVTPLGALSIIISA LA +L+EKLH FGILGCVLCVVGS
Sbjct: 1 TVIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHAILQEKLHTFGILGCVLCVVGSI 60
Query: 140 TIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVLAATFVLIFRFIPQYGQTHIMVYIGV 199
TIVLHAPQER IDSV EVW LATEP FL YA V+AA VLI+ +PQ+GQT+IMVYIGV
Sbjct: 61 TIVLHAPQERNIDSVREVWDLATEPGFLCYAAIVVAAALVLIYFVVPQHGQTNIMVYIGV 120
Query: 200 CSLVGSLSV 208
CSL+GSL+V
Sbjct: 121 CSLLGSLTV 129
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.140 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,325,614
Number of extensions: 327033
Number of successful extensions: 823
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 812
Number of HSP's successfully gapped: 10
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)