BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0714600 Os01g0714600|AK059855
(168 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0714600 Conserved hypothetical protein 300 4e-82
Os02g0216300 Conserved hypothetical protein 126 7e-30
Os06g0580100 Conserved hypothetical protein 115 2e-26
Os01g0238200 Conserved hypothetical protein 105 1e-23
Os06g0147100 Conserved hypothetical protein 85 3e-17
Os06g0147300 Conserved hypothetical protein 83 1e-16
Os06g0147400 Conserved hypothetical protein 83 1e-16
Os06g0146800 Conserved hypothetical protein 78 3e-15
Os05g0181800 Conserved hypothetical protein 74 5e-14
Os05g0181700 Conserved hypothetical protein 69 2e-12
Os05g0181600 65 2e-11
>Os01g0714600 Conserved hypothetical protein
Length = 168
Score = 300 bits (767), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 152/168 (90%), Positives = 152/168 (90%)
Query: 1 MSSLRREAPPISDYEALDGSGKCTDEXXXXXXXXXXXXXXXXAFAFTILAINCGAAIYHS 60
MSSLRREAPPISDYEALDGSGKCTDE AFAFTILAINCGAAIYHS
Sbjct: 1 MSSLRREAPPISDYEALDGSGKCTDEPSCSSDPSKDSSSCTSAFAFTILAINCGAAIYHS 60
Query: 61 RRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKAGVWVLSTVLTILFTYRVA 120
RRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKAGVWVLSTVLTILFTYRVA
Sbjct: 61 RRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKAGVWVLSTVLTILFTYRVA 120
Query: 121 ALMPFPVAVVVWAMSVFTILAGFYMFFVCSDEVKAAPEERPAKVSDMA 168
ALMPFPVAVVVWAMSVFTILAGFYMFFVCSDEVKAAPEERPAKVSDMA
Sbjct: 121 ALMPFPVAVVVWAMSVFTILAGFYMFFVCSDEVKAAPEERPAKVSDMA 168
>Os02g0216300 Conserved hypothetical protein
Length = 159
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 79/110 (71%)
Query: 45 AFTILAINCGAAIYHSRRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKAGV 104
F L N G A+Y S RD ++ FV+ +++ L+SLF LRLFE P SPRR H+K V
Sbjct: 43 GFAFLTFNSGMAVYRSDRDLATIFFVVFSYVDLVSLFYFLRLFEKTPPESPRRHHIKTAV 102
Query: 105 WVLSTVLTILFTYRVAALMPFPVAVVVWAMSVFTILAGFYMFFVCSDEVK 154
W+L+T+LT +F+Y+VAA+MPFPV V+VWAM+ T+L GFY FF+ SDE K
Sbjct: 103 WLLTTMLTAVFSYKVAAIMPFPVQVLVWAMAAATVLGGFYAFFLHSDEKK 152
>Os06g0580100 Conserved hypothetical protein
Length = 150
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Query: 43 AFAFTILAINCGAAIYHSRRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKA 102
A F L N G AIY S D SVAFVL +++ L+ LF LRLFE PR S RR +K
Sbjct: 32 ALGFGFLTFNSGMAIYRSDGDRGSVAFVLTSYIDLVLLFACLRLFEKAPRDSARREWLKV 91
Query: 103 GVWVLSTVLTILFTYRVAALMPFPVAVVVWAMSVFTILAGFYMFFVCSDEVKAAPEERPA 162
VW L+T+LT++F+Y+VAA+MP VAV+VWAM+ TI GFY FFV D KAA E+
Sbjct: 92 FVWGLTTLLTVMFSYKVAAIMPPVVAVIVWAMAFATIGGGFYAFFVHQD--KAAQLEQAN 149
Query: 163 K 163
+
Sbjct: 150 R 150
>Os01g0238200 Conserved hypothetical protein
Length = 122
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 71/106 (66%)
Query: 43 AFAFTILAINCGAAIYHSRRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKA 102
+ F L+ NCG AIY S DP +VAFV+ A+L LI+LF L L E P R+ +KA
Sbjct: 12 SLGFAFLSFNCGMAIYRSSSDPSAVAFVVVAYLALIALFRCLHLLERAPAGGQARASMKA 71
Query: 103 GVWVLSTVLTILFTYRVAALMPFPVAVVVWAMSVFTILAGFYMFFV 148
VW LST+LT++F+Y+VAA+MP A VW M + TI+AGFY FFV
Sbjct: 72 AVWGLSTLLTLMFSYKVAAIMPLWGAAGVWVMGLGTIVAGFYAFFV 117
>Os06g0147100 Conserved hypothetical protein
Length = 119
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 45 AFTILAINCGAAIYHSRRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKAGV 104
IL +N G AIY SR D +VAFVL ++ L+ LF L FE P SP R +K V
Sbjct: 14 GLGILTVNSGLAIYRSRGDAAAVAFVLGSYTALLLLFSCLSAFERAPPGSPARGRLKRAV 73
Query: 105 WVLSTVLTILFTYRVAALMPFPVAVVVWAMSVFTILAGFYMFFV 148
W LST++T +F ++VAALMP PVA VVWA++V T L GF FF+
Sbjct: 74 WALSTLVTAMFAWKVAALMPPPVAAVVWALAVATSLGGFLAFFI 117
>Os06g0147300 Conserved hypothetical protein
Length = 120
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 69/104 (66%)
Query: 45 AFTILAINCGAAIYHSRRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKAGV 104
F +L + AAI+ S + +F++ ++L L+ LF LR FE+ PR+SP R KAGV
Sbjct: 11 GFILLTASSIAAIHRSHGEITETSFIVVSYLSLVLLFVFLRRFEAAPRNSPARGGAKAGV 70
Query: 105 WVLSTVLTILFTYRVAALMPFPVAVVVWAMSVFTILAGFYMFFV 148
WV++ +L +F++RV+ALMP+PV ++W M+ T+L GFY F+
Sbjct: 71 WVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFL 114
>Os06g0147400 Conserved hypothetical protein
Length = 140
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 68/108 (62%)
Query: 45 AFTILAINCGAAIYHSRRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKAGV 104
F LAIN IY + D ++AFV A+L L+ LF +R F+ P S R ++A V
Sbjct: 33 GFVALAINFALCIYRAEGDRGAIAFVTFAYLNLLLLFWCIRQFDQAPHGSAARGRIRAAV 92
Query: 105 WVLSTVLTILFTYRVAALMPFPVAVVVWAMSVFTILAGFYMFFVCSDE 152
W+L+T LT +FT++VAALMP PVA V W M+ T++ GFY FF+ D+
Sbjct: 93 WILATSLTAVFTWKVAALMPLPVAAVAWVMAAATVVGGFYGFFIHEDK 140
>Os06g0146800 Conserved hypothetical protein
Length = 115
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 45 AFTILAINCGAAIYHSRRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHVKAGV 104
F L N AIY SR DP +VAFV A+ ++ LF L FE R R K V
Sbjct: 13 GFGALTFNSALAIYRSRGDPATVAFVAGAYAAIVLLFYFLLRFE---RRRDDRGRTKVVV 69
Query: 105 WVLSTVLTILFTYRVAALMPFPVAVVVWAMSVFTILAGFYMFFV 148
WVL+T+LT +F RVA LMP VA VVW M+ T +AGF+ FF+
Sbjct: 70 WVLTTLLTAMFAARVAPLMPPLVAFVVWVMAAGTSVAGFWAFFL 113
>Os05g0181800 Conserved hypothetical protein
Length = 174
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 14/105 (13%)
Query: 58 YHSRRDPWSVAFVLAAFLMLISLFCALRLFESLP-------------RSSPRRSHVKAGV 104
Y +RR+PW +AFVL A+ L LF L ++E LP + R +K V
Sbjct: 42 YRARREPWDLAFVLFAYADLGLLFLCLSMYERLPPPLEEIQKGDSGDDGAAVRRRLKMAV 101
Query: 105 WVLSTVLTILFTYRVAALMPFP-VAVVVWAMSVFTILAGFYMFFV 148
W LST L++ F +RVAA+MP P + VW M+ +AGFY+ FV
Sbjct: 102 WALSTALSVAFAWRVAAVMPAPAMRAAVWGMTSTVAVAGFYLLFV 146
>Os05g0181700 Conserved hypothetical protein
Length = 177
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 60 SRRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSP--RRSHVKAGVWVLSTVLTILFTY 117
+R DPW +AFV+AA+ L +LF LR E L SP R ++ W LSTVL+ LF Y
Sbjct: 57 ARHDPWDLAFVVAAYASLAALFVVLRRAERLTPESPADDRRCLQRAAWALSTVLSCLFAY 116
Query: 118 RVAALMPFPVAVVVWAMSVFTILAGFYMFFVCSDEVKAAPEE 159
RVA +MP +AV VWAM+ T++AG F V +D + + E+
Sbjct: 117 RVARIMPAAMAVAVWAMTA-TVVAGGLYFLVLNDGDRGSEED 157
>Os05g0181600
Length = 182
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 63 DPWSVAFVLAAFLMLISLFCALRLFESLPRSSP--RRSHVKAGVWVLSTVLTILFTYRVA 120
DPW +AFV+AA+ L +LF LR + L SP R + W L T L+ F YRV
Sbjct: 61 DPWDLAFVVAAYANLAALFVVLRRVKQLTPMSPAKERRRLLRQAWELLTALSCAFAYRVE 120
Query: 121 ALMPFPVAVVVWAMSVFTILAGFYMFFVCSDEVKAAPEER 160
MP +AV VWAM+ ++ G Y F V +D + +R
Sbjct: 121 QTMPAAMAVFVWAMTASVVVGGVY-FLVLNDGRGSGDCDR 159
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,022,741
Number of extensions: 156849
Number of successful extensions: 650
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 15
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 152 (63.2 bits)