Os02g0216300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0216300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.64 | 0.321 | 13.1 | 0.99 | 0.713 | -1.17 | -0.266 | 0.144 | 0.37 | 22.9 | 24.68 | 175 | -- | -- |
| 46.55 | 0.318 | 13.1 | 0.962 | 0.696 | -1.19 | -0.267 | -- | 0.326 | 23 | 25.49 | 159 | -- | -- |
| 46.82 | 0.319 | 13.1 | 1.02 | 0.696 | -1.22 | -- | 0.372 | 0.331 | 23 | 25.53 | 160 | -- | -- |
| 46.83 | 0.319 | 13.1 | 0.97 | 0.709 | -1.16 | -- | -- | 0.32 | 23.1 | 25.59 | 162 | -- | -- |
| 66.94 | 0.381 | 13 | 1.19 | -- | -1.67 | -- | 1.55 | 0.41 | -- | 25.34 | 8 | -- | -- |
| 68.62 | 0.388 | 13.1 | 0.788 | 0.938 | -- | 0.0337 | -- | 0.263 | 1.06 | -- | -- | -- | -- |
| 68.62 | 0.388 | 13.1 | 0.787 | 0.938 | -- | -- | -- | 0.263 | 1.06 | -- | -- | -- | -- |
| 67.27 | 0.382 | 13 | 1.03 | -- | -1.52 | -- | -- | 0.417 | -- | 24.61 | 9 | -- | -- |
| 70.59 | 0.391 | 13.1 | -- | 0.728 | -0.968 | -- | -- | 0.213 | 0.00149 | 26.4 | 156 | -- | -- |
| 123.3 | 0.519 | 13.1 | 0.822 | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
| 84.93 | 0.431 | 13.1 | -- | 0.951 | -- | -- | -- | 0.175 | 1.09 | -- | -- | -- | -- |
| 94.73 | 0.453 | 13.1 | -- | -- | -1.38 | -- | -- | 0.275 | -- | 24.9 | 7 | -- | -- |
| 141.13 | 0.554 | 13.1 | -- | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 8 | 44.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 25 | 44.89 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 144 | 46.58 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 223 | 47.20 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 17 |
| 254 | 47.40 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 256 | 47.40 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 291 | 47.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 299 | 47.54 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 18 |
| 408 | 47.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 476 | 48.30 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 483 | 48.34 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 22 |
| 603 | 48.84 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 625 | 48.96 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 743 | 49.45 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 10 |
| 822 | 49.79 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 838 | 49.84 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 936 | 50.17 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 22 |
| 949 | 50.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 958 | 50.25 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 10 |
| 980 | 50.32 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |