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Os01g0714600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.38 (0.0409) R2 : 0.301
β1 : 1.9 (0.149) R2dD : 0.264 R2D : 0.16
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.572 (0.081) R2dE : 0.0875 R2E : -0.015
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.625 (0.0916) R2dN8 : 0.109 R2N8 : -0.0272
σ : 0.754
deviance : 262.24
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.8
memory length : 65
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.67 0.747 9.4 1.77 0.172 -0.517 -1.48 -0.666 0.557 8.16 25.7 65 -- --
253.55 0.747 9.39 1.91 0.244 -0.522 -1.47 -- 0.554 9.09 25.7 62 -- --
259.18 0.756 9.4 1.72 0.251 -0.525 -- -0.677 0.516 9.69 25.7 65 -- --
260.76 0.752 9.38 1.9 0.162 -0.569 -- -- 0.619 8.48 25.8 64 -- --
260.97 0.752 9.41 1.72 -- -0.536 -- -0.703 0.541 -- 25.8 73 -- --
278.38 0.782 9.42 1.75 0.433 -- -1.14 -- 0.393 6.42 -- -- -- --
279.51 0.783 9.43 1.73 0.47 -- -- -- 0.393 4.89 -- -- -- --
262.24 0.754 9.38 1.9 -- -0.572 -- -- 0.625 -- 25.8 65 -- --
350.73 0.877 9.45 -- 0.287 -0.347 -- -- 0.297 6.81 25.8 35 -- --
291.15 0.797 9.43 1.75 -- -- -- -- 0.405 -- -- -- -- --
358.49 0.886 9.47 -- 0.501 -- -- -- 0.2 4.78 -- -- -- --
354.73 0.88 9.45 -- -- -0.402 -- -- 0.316 -- 25.7 96 -- --
371.79 0.9 9.47 -- -- -- -- -- 0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.98 temperature 25.0 270 < th dose independent rect. 17 1
2 242.08 temperature 25.0 90 < th dose independent rect. 13 8
11 244.56 temperature 30.0 270 < th dose dependent rect. 17 1
14 244.73 temperature 25.0 90 < th dose independent rect. 15 6
19 245.47 temperature 30.0 270 < th dose dependent rect. 13 7
26 245.97 temperature 30.0 270 < th dose dependent rect. 15 4
68 248.54 temperature 25.0 10 < th dose dependent rect. 13 7
72 248.63 radiation 1.0 270 < th dose dependent rect. 8 10
104 249.83 radiation 1.0 270 < th dose dependent sin 1 NA
106 249.88 temperature 25.0 30 > th dose independent rect. 8 21
133 250.78 radiation 1.0 270 < th dose independent sin 1 NA
137 250.83 radiation 1.0 270 < th dose independent rect. 17 1
143 251.06 radiation 1.0 270 < th dose independent rect. 8 10
152 251.25 temperature 10.0 10 > th dose dependent rect. 7 22
159 251.46 temperature 25.0 90 < th dose independent rect. 12 21
164 251.64 wind 7.0 270 < th dose independent rect. 13 13
165 251.65 temperature 25.0 90 < th dose independent rect. 12 19
170 251.75 temperature 10.0 270 > th dose dependent rect. 7 18
172 251.81 humidity 80.0 10 > th dose dependent rect. 5 18
175 251.87 temperature 10.0 90 > th dose dependent rect. 7 21
177 251.91 temperature 25.0 30 > th dose independent rect. 8 14
179 251.95 humidity 70.0 270 > th dose independent rect. 16 14
186 252.07 radiation 1.0 270 < th dose dependent rect. 17 1
201 252.63 radiation 1.0 270 < th dose independent rect. 3 15
212 252.76 temperature 25.0 90 < th dose independent rect. 3 20
214 252.76 radiation 1.0 270 < th dose dependent rect. 3 15
217 252.79 radiation 10.0 270 < th dose dependent rect. 11 20
226 252.95 temperature 25.0 30 > th dose independent sin 19 NA
227 252.95 radiation 10.0 270 < th dose dependent rect. 13 18
232 253.02 radiation 1.0 270 > th dose independent rect. 6 23
233 253.02 humidity 70.0 10 > th dose dependent rect. 5 15
235 253.04 temperature 25.0 90 < th dose independent rect. 1 22
237 253.04 humidity 80.0 90 > th dose dependent rect. 4 19
245 253.14 atmosphere 1000.0 90 > th dose independent rect. 17 14
249 253.20 radiation 1.0 270 > th dose independent rect. 6 13
274 253.33 temperature 25.0 90 < th dose independent rect. 4 17
276 253.33 wind 5.0 90 > th dose dependent rect. 17 5
282 253.38 humidity 60.0 270 > th dose dependent rect. 17 1
315 253.72 atmosphere 1000.0 10 > th dose independent rect. 17 15
318 253.73 temperature 25.0 30 > th dose independent rect. 23 23
320 253.75 wind 7.0 90 > th dose independent rect. 17 11
328 253.82 humidity 70.0 270 > th dose independent rect. 17 1
340 253.89 wind 5.0 90 > th dose dependent rect. 17 11
366 254.05 wind 7.0 90 > th dose independent rect. 17 5
371 254.08 wind 5.0 90 > th dose dependent rect. 17 8
375 254.11 temperature 10.0 30 > th dose dependent rect. 8 18
400 254.30 humidity 70.0 30 > th dose dependent rect. 2 21
433 254.55 precipitation 0.1 90 < th dose independent rect. 7 21
434 254.55 precipitation 0.1 90 < th dose dependent rect. 7 21
468 254.76 radiation 1.0 270 < th dose independent rect. 1 22
510 254.99 humidity 80.0 10 > th dose independent rect. 5 15
515 255.02 wind 7.0 270 < th dose independent rect. 6 20
517 255.03 precipitation 0.1 270 < th dose independent rect. 5 22
518 255.03 precipitation 0.1 270 < th dose dependent rect. 5 22
532 255.14 atmosphere 995.0 90 > th dose independent rect. 7 21
540 255.20 radiation 1.0 270 > th dose independent rect. 17 23
554 255.30 wind 7.0 270 < th dose independent rect. 5 22
561 255.32 precipitation 0.1 270 > th dose independent rect. 9 10
602 255.56 humidity 70.0 270 > th dose independent rect. 16 3
603 255.56 temperature 30.0 90 < th dose dependent rect. 12 20
604 255.57 radiation 1.0 270 > th dose independent sin 1 NA
605 255.58 precipitation 0.1 270 < th dose independent sin 23 NA
608 255.58 precipitation 0.1 270 < th dose dependent sin 23 NA
629 255.66 radiation 10.0 270 < th dose dependent rect. 1 20
632 255.67 humidity 50.0 10 > th dose dependent rect. 17 15
637 255.69 radiation 10.0 270 < th dose independent rect. 15 15
643 255.72 atmosphere 995.0 10 > th dose independent rect. 7 22
647 255.75 precipitation 0.1 270 < th dose independent rect. 7 18
650 255.75 precipitation 0.1 270 < th dose dependent rect. 7 18
664 255.79 wind 7.0 270 < th dose independent sin 16 NA
717 256.00 radiation 10.0 270 < th dose dependent rect. 1 22
719 256.01 humidity 80.0 30 > th dose independent rect. 2 21
726 256.03 humidity 70.0 90 > th dose independent rect. 12 19
740 256.08 temperature 25.0 30 < th dose independent sin 18 NA
749 256.11 humidity 80.0 10 > th dose independent rect. 5 18
759 256.15 humidity 70.0 10 > th dose independent rect. 17 15
792 256.25 temperature 25.0 90 > th dose independent rect. 3 23
808 256.33 wind 7.0 90 < th dose independent sin 12 NA
811 256.34 temperature 25.0 90 > th dose independent rect. 13 23
824 256.38 precipitation 0.1 270 > th dose independent rect. 16 2
833 256.41 wind 7.0 270 < th dose independent rect. 7 18
835 256.41 temperature 25.0 30 > th dose independent rect. 19 23
844 256.43 temperature 25.0 90 > th dose independent no NA NA
847 256.44 wind 7.0 270 < th dose independent rect. 11 10
851 256.45 wind 7.0 270 < th dose independent rect. 10 23
885 256.57 humidity 50.0 270 > th dose dependent rect. 15 15
906 256.67 precipitation 0.1 270 > th dose independent rect. 14 5
964 256.85 humidity 50.0 270 > th dose independent rect. 11 9
995 256.93 temperature 25.0 10 < th dose dependent sin 21 NA