Os06g0147400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0147400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.17 | 0.258 | 8.87 | 1.63 | 0.302 | -1.36 | 0.108 | 0.195 | 0.0676 | 10.3 | 26.73 | 1146 | -- | -- |
| 30.21 | 0.256 | 8.87 | 1.66 | 0.303 | -1.36 | 0.134 | -- | 0.0732 | 10.2 | 26.52 | 1149 | -- | -- |
| 30.21 | 0.256 | 8.87 | 1.63 | 0.306 | -1.36 | -- | 0.239 | 0.0675 | 10.3 | 26.77 | 1134 | -- | -- |
| 30.26 | 0.256 | 8.87 | 1.67 | 0.3 | -1.37 | -- | -- | 0.0764 | 10.2 | 26.5 | 1146 | -- | -- |
| 33.05 | 0.268 | 8.88 | 1.63 | -- | -1.37 | -- | 0.0826 | 0.0809 | -- | 25.62 | 1443 | -- | -- |
| 56.93 | 0.354 | 8.8 | 2.08 | 0.21 | -- | -0.0715 | -- | 0.383 | 8.17 | -- | -- | -- | -- |
| 56.94 | 0.353 | 8.8 | 2.08 | 0.209 | -- | -- | -- | 0.384 | 8.32 | -- | -- | -- | -- |
| 33.03 | 0.268 | 8.87 | 1.66 | -- | -1.39 | -- | -- | 0.0859 | -- | 25.4 | 1434 | -- | -- |
| 43.66 | 0.308 | 8.96 | -- | 0.229 | -1.89 | -- | -- | -0.312 | 9.09 | 22.27 | 47520 | -- | -- |
| 59.37 | 0.36 | 8.81 | 2.08 | -- | -- | -- | -- | 0.386 | -- | -- | -- | -- | -- |
| 170.68 | 0.611 | 8.85 | -- | 0.223 | -- | -- | -- | 0.152 | 7.63 | -- | -- | -- | -- |
| 46.39 | 0.317 | 8.96 | -- | -- | -1.86 | -- | -- | -0.295 | -- | 22.19 | 47520 | -- | -- |
| 173.35 | 0.615 | 8.86 | -- | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 17 | 30.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 56 | 30.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 72 | 30.71 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 78 | 30.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 106 | 30.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 127 | 30.88 | temperature | 25 | 1440 | < th | dose dependent | sin | 3 | NA |
| 207 | 31.19 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 262 | 31.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 280 | 31.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 342 | 31.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 346 | 31.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 456 | 31.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 472 | 31.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 488 | 31.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 554 | 32.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 656 | 32.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 688 | 32.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 689 | 32.24 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 731 | 32.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 749 | 32.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 787 | 32.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 901 | 32.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |