Os06g0147300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0147300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 288.56 | 0.798 | 6.16 | 0.208 | 1.33 | -0.525 | -1 | -5.01 | -0.61 | 8.78 | 31.07 | 1056 | -- | -- |
| 286.77 | 0.789 | 6.03 | 1.02 | 1.08 | -1.36 | -1.2 | -- | -0.417 | 9.03 | 26.3 | 969 | -- | -- |
| 291.82 | 0.796 | 6.16 | 0.171 | 1.35 | -0.504 | -- | -4.94 | -0.608 | 8.78 | 31.2 | 1075 | -- | -- |
| 290.06 | 0.793 | 6.03 | 1.02 | 1.17 | -1.3 | -- | -- | -0.399 | 8.81 | 26.4 | 1020 | -- | -- |
| 349.13 | 0.87 | 6.09 | 0.548 | -- | -1.93 | -- | -2.79 | -0.384 | -- | 24.9 | 858 | -- | -- |
| 341.06 | 0.866 | 6.02 | 0.701 | 1.44 | -- | -0.723 | -- | -0.422 | 9.13 | -- | -- | -- | -- |
| 342.89 | 0.867 | 6.02 | 0.676 | 1.44 | -- | -- | -- | -0.422 | 9.16 | -- | -- | -- | -- |
| 338.19 | 0.857 | 6.02 | 1.16 | -- | -2.09 | -- | -- | -0.237 | -- | 24.82 | 831 | -- | -- |
| 315.01 | 0.827 | 6.07 | -- | 1.24 | -1.03 | -- | -- | -0.578 | 8.79 | 27.9 | 1040 | -- | -- |
| 463.35 | 1.01 | 6.06 | 0.671 | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
| 354.93 | 0.881 | 6.04 | -- | 1.44 | -- | -- | -- | -0.497 | 9.12 | -- | -- | -- | -- |
| 371.97 | 0.898 | 6.06 | -- | -- | -1.85 | -- | -- | -0.39 | -- | 24.94 | 817 | -- | -- |
| 475.24 | 1.02 | 6.08 | -- | -- | -- | -- | -- | -0.489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.81 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 280.63 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 3 | 280.65 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 4 | 280.95 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 19 | 281.55 | temperature | 25.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 47 | 284.28 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 79 | 287.05 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 80 | 287.05 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 81 | 287.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 88 | 287.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 114 | 288.62 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 121 | 288.89 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 129 | 289.44 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 156 | 289.91 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 258 | 290.71 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 266 | 290.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 292 | 290.91 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 12 |
| 296 | 290.96 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 314 | 291.06 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 317 | 291.09 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 335 | 291.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 11 |
| 341 | 291.32 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 359 | 291.45 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 406 | 291.71 | temperature | 30.0 | 720 | > th | dose independent | sin | 12 | NA |
| 453 | 291.96 | temperature | 30.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 484 | 292.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 579 | 292.42 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 604 | 292.67 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 635 | 292.78 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 657 | 292.84 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 663 | 292.87 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 786 | 292.99 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 792 | 293.02 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 820 | 293.08 | humidity | 70.0 | 720 | < th | dose independent | sin | 12 | NA |
| 863 | 293.29 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 887 | 293.38 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 966 | 293.56 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 972 | 293.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 989 | 293.59 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 12 | 20 |