BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0147300 Os06g0147300|AK111114
(120 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0147300 Conserved hypothetical protein 199 3e-52
Os02g0216300 Conserved hypothetical protein 96 9e-21
Os06g0580100 Conserved hypothetical protein 79 7e-16
Os01g0714600 Conserved hypothetical protein 78 1e-15
Os06g0147000 Conserved hypothetical protein 75 8e-15
Os06g0146800 Conserved hypothetical protein 68 1e-12
Os06g0147100 Conserved hypothetical protein 65 8e-12
Os06g0147400 Conserved hypothetical protein 65 8e-12
>Os06g0147300 Conserved hypothetical protein
Length = 120
Score = 199 bits (507), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/120 (85%), Positives = 103/120 (85%)
Query: 1 MASEAATTCIGFILLTASSIAAIHRSHGEITETXXXXXXXXXXXXXXXXXRRFEAAPRNS 60
MASEAATTCIGFILLTASSIAAIHRSHGEITET RRFEAAPRNS
Sbjct: 1 MASEAATTCIGFILLTASSIAAIHRSHGEITETSFIVVSYLSLVLLFVFLRRFEAAPRNS 60
Query: 61 PARGGAKAGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLHHPGVD 120
PARGGAKAGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLHHPGVD
Sbjct: 61 PARGGAKAGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLHHPGVD 120
>Os02g0216300 Conserved hypothetical protein
Length = 159
Score = 95.5 bits (236), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%)
Query: 8 TCIGFILLTASSIAAIHRSHGEITETXXXXXXXXXXXXXXXXXRRFEAAPRNSPARGGAK 67
T +GF LT +S A++RS ++ R FE P SP R K
Sbjct: 40 TLLGFAFLTFNSGMAVYRSDRDLATIFFVVFSYVDLVSLFYFLRLFEKTPPESPRRHHIK 99
Query: 68 AGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLH 115
VW++T +L AVFS++V+A+MP+PV ++W MAA+TVLGGFYA FLH
Sbjct: 100 TAVWLLTTMLTAVFSYKVAAIMPFPVQVLVWAMAAATVLGGFYAFFLH 147
>Os06g0580100 Conserved hypothetical protein
Length = 150
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 8 TCIGFILLTASSIAAIHRSHGEITETXXXXXXXXXXXXXXXXXRRFEAAPRNSPARGGAK 67
T +GF LT +S AI+RS G+ R FE APR+S R K
Sbjct: 31 TALGFGFLTFNSGMAIYRSDGDRGSVAFVLTSYIDLVLLFACLRLFEKAPRDSARREWLK 90
Query: 68 AGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLHH 116
VW +T LL +FS++V+A+MP V I+W MA +T+ GGFYA F+H
Sbjct: 91 VFVWGLTTLLTVMFSYKVAAIMPPVVAVIVWAMAFATIGGGFYAFFVHQ 139
>Os01g0714600 Conserved hypothetical protein
Length = 168
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%)
Query: 7 TTCIGFILLTASSIAAIHRSHGEITETXXXXXXXXXXXXXXXXXRRFEAAPRNSPARGGA 66
T+ F +L + AAI+ S + R FE+ PR+SP R
Sbjct: 41 TSAFAFTILAINCGAAIYHSRRDPWSVAFVLAAFLMLISLFCALRLFESLPRSSPRRSHV 100
Query: 67 KAGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFL 114
KAGVWV++ +L +F++RV+ALMP+PV ++W M+ T+L GFY F+
Sbjct: 101 KAGVWVLSTVLTILFTYRVAALMPFPVAVVVWAMSVFTILAGFYMFFV 148
>Os06g0147000 Conserved hypothetical protein
Length = 118
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 8 TCIGFILLTASSIAAIHRSHGEITETXXXXXXXXXXXXXXXXXRRFEAAPRNSPARGGAK 67
T +GF LT +SI AI+RS G++ +FE A RG K
Sbjct: 12 TKVGFGALTCNSIFAIYRSQGDLASVAFVVAAYAALLLLFYFLGKFERA--RPEERGKVK 69
Query: 68 AGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLH 115
A VW +T LL A+F+ RV+ LMP V A +W+MAA+TV+GGF+A FLH
Sbjct: 70 AAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLH 117
>Os06g0146800 Conserved hypothetical protein
Length = 115
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 1 MASEAATTCIGFILLTASSIAAIHRSHGEITETXXXXXXXXXXXXXXXXXRRFEAAPRNS 60
M A T +GF LT +S AI+RS G+ RFE R
Sbjct: 3 MDRHGALTKLGFGALTFNSALAIYRSRGDPATVAFVAGAYAAIVLLFYFLLRFE---RRR 59
Query: 61 PARGGAKAGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLH 115
RG K VWV+T LL A+F+ RV+ LMP V ++WVMAA T + GF+A FL+
Sbjct: 60 DDRGRTKVVVWVLTTLLTAMFAARVAPLMPPLVAFVVWVMAAGTSVAGFWAFFLN 114
>Os06g0147100 Conserved hypothetical protein
Length = 119
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%)
Query: 11 GFILLTASSIAAIHRSHGEITETXXXXXXXXXXXXXXXXXRRFEAAPRNSPARGGAKAGV 70
G +LT +S AI+RS G+ FE AP SPARG K V
Sbjct: 14 GLGILTVNSGLAIYRSRGDAAAVAFVLGSYTALLLLFSCLSAFERAPPGSPARGRLKRAV 73
Query: 71 WVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLH 115
W ++ L+ A+F+W+V+ALMP PV A++W +A +T LGGF A F++
Sbjct: 74 WALSTLVTAMFAWKVAALMPPPVAAVVWALAVATSLGGFLAFFIY 118
>Os06g0147400 Conserved hypothetical protein
Length = 140
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%)
Query: 8 TCIGFILLTASSIAAIHRSHGEITETXXXXXXXXXXXXXXXXXRRFEAAPRNSPARGGAK 67
+ IGF+ L + I+R+ G+ R+F+ AP S ARG +
Sbjct: 30 SLIGFVALAINFALCIYRAEGDRGAIAFVTFAYLNLLLLFWCIRQFDQAPHGSAARGRIR 89
Query: 68 AGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLHH 116
A VW++ L AVF+W+V+ALMP PV A+ WVMAA+TV+GGFY F+H
Sbjct: 90 AAVWILATSLTAVFTWKVAALMPLPVAAVAWVMAAATVVGGFYGFFIHE 138
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,488,005
Number of extensions: 105766
Number of successful extensions: 511
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 9
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)