Os06g0147000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0147000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 265.61 | 0.766 | 9.42 | -4.89 | 2.06 | -1.02 | 2.54 | -6.05 | -1.33 | 3.22 | 1000 | 735 | 13.1 | -- |
| 290.28 | 0.8 | 9.45 | -5.13 | 0.506 | -1.64 | 4.25 | -- | -1.32 | 8.13 | 1001 | 7189 | 14.6 | -- |
| 268.84 | 0.764 | 9.42 | -4.86 | 1.75 | -0.978 | -- | -5.15 | -1.31 | 2.89 | 1000 | 612 | 14 | -- |
| 319.58 | 0.833 | 9.45 | -4.98 | 1.95 | -1.41 | -- | -- | -1.3 | 3.5 | 1001 | 1171 | 16.7 | -- |
| 342.59 | 0.862 | 9.4 | -5.04 | -- | -1.89 | -- | -3.68 | -1.28 | -- | 999.8 | 330 | 15.4 | -- |
| 355.27 | 0.884 | 9.45 | -4.87 | 1.83 | -- | 1.29 | -- | -1.4 | 4.72 | -- | -- | -- | -- |
| 358.11 | 0.886 | 9.46 | -4.88 | 1.83 | -- | -- | -- | -1.41 | 4.39 | -- | -- | -- | -- |
| 339.28 | 0.858 | 9.47 | -5.09 | -- | -2.13 | -- | -- | -1.35 | -- | 1000 | 491 | 17.5 | -- |
| 966.13 | 1.45 | 9.32 | -- | 1.67 | -0.96 | -- | -- | -0.796 | 4.45 | 995.5 | 4319 | 17.2 | -- |
| 538.09 | 1.08 | 9.47 | -4.8 | -- | -- | -- | -- | -1.36 | -- | -- | -- | -- | -- |
| 984.74 | 1.47 | 9.34 | -- | 1.74 | -- | -- | -- | -0.864 | 4.45 | -- | -- | -- | -- |
| 981.72 | 1.46 | 9.36 | -- | -- | -1.93 | -- | -- | -0.827 | -- | 995.8 | 576 | 18.3 | -- |
| 1146.82 | 1.58 | 9.35 | -- | -- | -- | -- | -- | -0.826 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 261.54 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 14 | 17 |
| 7 | 264.20 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 11 | 14 |
| 12 | 265.07 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 10 |
| 15 | 265.68 | atmosphere | 1000 | 720 | > th | dose independent | sin | 19 | NA |
| 19 | 265.92 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 21 |
| 48 | 267.68 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 4 |
| 51 | 267.93 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 7 | 17 |
| 56 | 268.20 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 6 |
| 83 | 269.83 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 95 | 270.63 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 18 |
| 111 | 271.29 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 120 | 271.56 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 17 |
| 177 | 274.04 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 13 |
| 184 | 274.24 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 185 | 274.31 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 201 | 275.08 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 7 | 10 |
| 223 | 275.75 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 20 | 21 |
| 229 | 275.91 | humidity | 90 | 720 | < th | dose independent | rect. | 10 | 15 |
| 236 | 275.99 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 4 | 13 |
| 245 | 276.31 | atmosphere | 995 | 720 | > th | dose dependent | sin | 22 | NA |
| 275 | 277.17 | humidity | 90 | 720 | < th | dose independent | sin | 17 | NA |
| 279 | 277.19 | radiation | 10 | 720 | < th | dose independent | rect. | 10 | 14 |
| 280 | 277.20 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 22 | 19 |
| 283 | 277.25 | humidity | 90 | 720 | < th | dose independent | rect. | 14 | 11 |
| 453 | 280.52 | radiation | 10 | 270 | < th | dose independent | rect. | 11 | 21 |
| 458 | 280.57 | radiation | 20 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 474 | 280.89 | atmosphere | 1000 | 720 | > th | dose independent | sin | 1 | NA |
| 572 | 282.75 | radiation | 10 | 720 | < th | dose independent | rect. | 10 | 9 |
| 655 | 284.02 | humidity | 50 | 4320 | > th | dose independent | rect. | 19 | 15 |
| 659 | 284.06 | radiation | 10 | 720 | < th | dose independent | sin | 20 | NA |
| 758 | 285.42 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 760 | 285.43 | radiation | 30 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 776 | 285.67 | radiation | 10 | 10 | < th | dose independent | sin | 20 | NA |
| 798 | 285.87 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 820 | 286.16 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 23 |
| 837 | 286.36 | radiation | 10 | 90 | < th | dose independent | no | NA | NA |
| 846 | 286.40 | radiation | 20 | 720 | < th | dose dependent | sin | 20 | NA |
| 873 | 286.65 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 4 |
| 889 | 286.77 | radiation | 10 | 30 | < th | dose independent | rect. | 21 | 23 |
| 903 | 286.84 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 969 | 287.35 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 23 |
| 998 | 287.61 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 23 |