BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0147000 Os06g0147000|AK120978
(118 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0147000 Conserved hypothetical protein 192 5e-50
Os06g0146800 Conserved hypothetical protein 119 4e-28
Os06g0580100 Conserved hypothetical protein 91 2e-19
Os02g0216300 Conserved hypothetical protein 88 2e-18
Os06g0147100 Conserved hypothetical protein 83 5e-17
Os01g0238200 Conserved hypothetical protein 77 3e-15
Os06g0147300 Conserved hypothetical protein 75 1e-14
>Os06g0147000 Conserved hypothetical protein
Length = 118
Score = 192 bits (488), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 97/118 (82%), Positives = 97/118 (82%)
Query: 1 MDHNDRHSSLLTKVGFGALTCNSIFAIYRSQGDXXXXXXXXXXXXXXXXXXXXXGKFERA 60
MDHNDRHSSLLTKVGFGALTCNSIFAIYRSQGD GKFERA
Sbjct: 1 MDHNDRHSSLLTKVGFGALTCNSIFAIYRSQGDLASVAFVVAAYAALLLLFYFLGKFERA 60
Query: 61 RPEERGKVKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLHP 118
RPEERGKVKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLHP
Sbjct: 61 RPEERGKVKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLHP 118
>Os06g0146800 Conserved hypothetical protein
Length = 115
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 5 DRHSSLLTKVGFGALTCNSIFAIYRSQGDXXXXXXXXXXXXXXXXXXXXXGKFERARPEE 64
DRH +L TK+GFGALT NS AIYRS+GD +FER R ++
Sbjct: 4 DRHGAL-TKLGFGALTFNSALAIYRSRGDPATVAFVAGAYAAIVLLFYFLLRFER-RRDD 61
Query: 65 RGKVKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLH 117
RG+ K VW LTTLLTAMFA+RVAPLMPPLVA VW+MAA T V GFWAFFL+
Sbjct: 62 RGRTKVVVWVLTTLLTAMFAARVAPLMPPLVAFVVWVMAAGTSVAGFWAFFLN 114
>Os06g0580100 Conserved hypothetical protein
Length = 150
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 1 MDHNDRHSSLLTKVGFGALTCNSIFAIYRSQGDXXXXXXXXXXXXXXXXXXXXXGKFERA 60
M+ N+ S LT +GFG LT NS AIYRS GD FE+A
Sbjct: 20 MNDNEGGFSWLTALGFGFLTFNSGMAIYRSDGDRGSVAFVLTSYIDLVLLFACLRLFEKA 79
Query: 61 RPEERGK---VKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLH 117
P + + +K VW LTTLLT MF+ +VA +MPP+VA VW MA AT+ GGF+AFF+H
Sbjct: 80 -PRDSARREWLKVFVWGLTTLLTVMFSYKVAAIMPPVVAVIVWAMAFATIGGGFYAFFVH 138
>Os02g0216300 Conserved hypothetical protein
Length = 159
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 2 DHNDRHSSLLTKVGFGALTCNSIFAIYRSQGDXXXXXXXXXXXXXXXXXXXXXGKFERAR 61
+ +D S LT +GF LT NS A+YRS D FE+
Sbjct: 30 EQHDMGLSPLTLLGFAFLTFNSGMAVYRSDRDLATIFFVVFSYVDLVSLFYFLRLFEKTP 89
Query: 62 PE--ERGKVKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLH 117
PE R +K AVW LTT+LTA+F+ +VA +MP V VW MAAATV+GGF+AFFLH
Sbjct: 90 PESPRRHHIKTAVWLLTTMLTAVFSYKVAAIMPFPVQVLVWAMAAATVLGGFYAFFLH 147
>Os06g0147100 Conserved hypothetical protein
Length = 119
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 1 MDHNDRHSSLLTKVGFGALTCNSIFAIYRSQGDXXXXXXXXXXXXXXXXXXXXXGKFERA 60
MD N R S+ +++ G G LT NS AIYRS+GD FERA
Sbjct: 1 MDPNGR-SAWISRAGLGILTVNSGLAIYRSRGDAAAVAFVLGSYTALLLLFSCLSAFERA 59
Query: 61 RP--EERGKVKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLH 117
P RG++K AVW+L+TL+TAMFA +VA LMPP VAA VW +A AT +GGF AFF++
Sbjct: 60 PPGSPARGRLKRAVWALSTLVTAMFAWKVAALMPPPVAAVVWALAVATSLGGFLAFFIY 118
>Os01g0238200 Conserved hypothetical protein
Length = 122
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 1 MDHNDRHSSLLTKVGFGALTCNSIFAIYRSQGDXXXXXXXXXXXXXXXXXXXXXGKFERA 60
MD R L +GF L+ N AIYRS D ERA
Sbjct: 1 MDRGGR-PGWLPSLGFAFLSFNCGMAIYRSSSDPSAVAFVVVAYLALIALFRCLHLLERA 59
Query: 61 RP--EERGKVKAAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLH 117
+ R +KAAVW L+TLLT MF+ +VA +MP AAGVW+M T+V GF+AFF+H
Sbjct: 60 PAGGQARASMKAAVWGLSTLLTLMFSYKVAAIMPLWGAAGVWVMGLGTIVAGFYAFFVH 118
>Os06g0147300 Conserved hypothetical protein
Length = 120
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 12 TKVGFGALTCNSIFAIYRSQGDXXXXXXXXXXXXXXXXXXXXXGKFERA--RPEERGKVK 69
T +GF LT +SI AI+RS G+ +FE A RG K
Sbjct: 8 TCIGFILLTASSIAAIHRSHGEITETSFIVVSYLSLVLLFVFLRRFEAAPRNSPARGGAK 67
Query: 70 AAVWSLTTLLTAMFASRVAPLMPPLVAAGVWIMAAATVVGGFWAFFLH 117
A VW +T LL A+F+ RV+ LMP V A +W+MAA+TV+GGF+A FLH
Sbjct: 68 AGVWVVTALLAAVFSWRVSALMPWPVDAIIWVMAASTVLGGFYALFLH 115
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,211,567
Number of extensions: 81942
Number of successful extensions: 345
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 9
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)