BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0667900 Os01g0667900|AK105335
(147 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0667900 Glutaredoxin-like, plant II family protein 215 7e-57
Os01g0241400 Glutaredoxin-like, plant II family protein 103 3e-23
Os02g0512400 Similar to Glutaredoxin 89 2e-18
Os01g0936000 Similar to AT.I.24-1 protein (Fragment) 80 4e-16
Os12g0538600 Glutaredoxin-like, plant II family protein 80 5e-16
Os04g0393500 Glutaredoxin-like, plant II family protein 76 9e-15
Os11g0656000 Glutaredoxin-like, plant II family protein 74 3e-14
Os11g0656400 74 4e-14
Os11g0656801 Similar to Glutaredoxin 72 1e-13
Os11g0655900 Glutaredoxin-like, plant II family protein 72 1e-13
Os07g0151100 72 2e-13
Os12g0538700 Similar to AT.I.24-1 protein (Fragment) 70 5e-13
Os05g0198200 Glutaredoxin-like, plant II family protein 70 7e-13
>Os01g0667900 Glutaredoxin-like, plant II family protein
Length = 147
Score = 215 bits (548), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 116/147 (78%)
Query: 1 MYQAIPYSSTRPWLRPEPAASVVDVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSP 60
MYQAIPYSSTRPWLRPEPAASVVDVVK SP
Sbjct: 1 MYQAIPYSSTRPWLRPEPAASVVDVVKVETTTAVAGRGGEAEVVGEEEAAEVRRAVAESP 60
Query: 61 VLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAGEAALKGVVPAGGEAAALPAVFVGGKLL 120
VLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAGEAALKGVVPAGGEAAALPAVFVGGKLL
Sbjct: 61 VLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAGEAALKGVVPAGGEAAALPAVFVGGKLL 120
Query: 121 GGLDRLMAVHISGELVPILKKAGALWL 147
GGLDRLMAVHISGELVPILKKAGALWL
Sbjct: 121 GGLDRLMAVHISGELVPILKKAGALWL 147
>Os01g0241400 Glutaredoxin-like, plant II family protein
Length = 136
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 71/109 (65%), Gaps = 20/109 (18%)
Query: 59 SPVLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAGEAALKGVVPAGGEA----------- 107
PV+VVGRRGCC+ HV +RLL G G NPAV EV +A +V A +A
Sbjct: 28 KPVVVVGRRGCCMAHVARRLLLGQGANPAVLEVGDDADPAALVDAALQARRRKDGGDKAA 87
Query: 108 ---------AALPAVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
A PAVF+GG+L+GGLDRLMA+H++GELVP+LK+AGALWL
Sbjct: 88 AGDGGGGAAVAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136
>Os02g0512400 Similar to Glutaredoxin
Length = 135
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 62/90 (68%), Gaps = 11/90 (12%)
Query: 69 CCLIHVVKRLLQGLGVNPAVHEV-------AGEAALKGVVPAGGEAAA----LPAVFVGG 117
CC+ H VKRL G+GV+P VHE+ E AL +V GG AAA +P VF+GG
Sbjct: 46 CCMCHAVKRLFCGMGVHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGG 105
Query: 118 KLLGGLDRLMAVHISGELVPILKKAGALWL 147
KL+G +DR+MA HI+G LVP+LK+AGALWL
Sbjct: 106 KLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
>Os01g0936000 Similar to AT.I.24-1 protein (Fragment)
Length = 125
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 63/94 (67%), Gaps = 10/94 (10%)
Query: 61 VLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAG-------EAALKGVVPAGGEAAALPAV 113
V++ G C + HVVK L LGV+ AVHEV E AL G+V G +PAV
Sbjct: 14 VVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMV---GRTPPVPAV 70
Query: 114 FVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
F+GGKL+G D++M++H++G+LVP+L++AGALWL
Sbjct: 71 FIGGKLVGPTDQVMSLHLAGKLVPLLREAGALWL 104
>Os12g0538600 Glutaredoxin-like, plant II family protein
Length = 103
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 61 VLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVA----GEAALKGVVPAGGEAAALPAVFVG 116
V++ CC+ H V RL LGVN VHE+ G+ + ++ G +P VF+G
Sbjct: 13 VVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIG 72
Query: 117 GKLLGGLDRLMAVHISGELVPILKKAGALWL 147
GKL+GG +++M++H+ GEL+P+LK AGALWL
Sbjct: 73 GKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103
>Os04g0393500 Glutaredoxin-like, plant II family protein
Length = 135
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 61/87 (70%), Gaps = 8/87 (9%)
Query: 69 CCLIHVVKRLLQGLGVNPAVHEVAGE--------AALKGVVPAGGEAAALPAVFVGGKLL 120
CC+ H VKRL G+GV+PAVHE+ + A + V G AAA+P VF+GGKL+
Sbjct: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLV 108
Query: 121 GGLDRLMAVHISGELVPILKKAGALWL 147
G +DR+MA HI+G LVP+LK+AGALWL
Sbjct: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
>Os11g0656000 Glutaredoxin-like, plant II family protein
Length = 109
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 9/96 (9%)
Query: 61 VLVVGRRGCCLIHVVKRLLQGLGVNPAVHE---------VAGEAALKGVVPAGGEAAALP 111
V+V + GCC+ V LL L V+ AVHE + E A + +G A+P
Sbjct: 14 VVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVP 73
Query: 112 AVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
AVF+GG L+GG ++MA+H+ GELVP+LK AGALWL
Sbjct: 74 AVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGALWL 109
>Os11g0656400
Length = 109
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 9/96 (9%)
Query: 61 VLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAGE--------AALKGVVPAGGEAA-ALP 111
V+V + GCC+ V LL L V+ AVHE+ E + + +GG A+P
Sbjct: 14 VVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVP 73
Query: 112 AVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
AVF+GG L+GG ++M VH+ GELVP+LK AGALWL
Sbjct: 74 AVFIGGSLVGGTSKVMTVHLKGELVPMLKSAGALWL 109
>Os11g0656801 Similar to Glutaredoxin
Length = 109
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 9/96 (9%)
Query: 61 VLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAGE--------AALKGVVPAGGEAA-ALP 111
V+V + GCC+ V LL L V+ AVHE+ E + + +GG A+P
Sbjct: 14 VVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVP 73
Query: 112 AVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
AVF+GG L+G ++MA+H+ GELVP+LK AGALWL
Sbjct: 74 AVFIGGSLVGSTSKVMAMHLKGELVPMLKNAGALWL 109
>Os11g0655900 Glutaredoxin-like, plant II family protein
Length = 108
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 60/96 (62%), Gaps = 9/96 (9%)
Query: 61 VLVVGRRGCCLIHVVKRLLQG-LGVNPAVHEVAGE--------AALKGVVPAGGEAAALP 111
V+V C + H V LL G LGVN AVHE+ + + + GG ALP
Sbjct: 13 VVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRLNGGGGGGRALP 72
Query: 112 AVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
AVFVGG L+GG +R+M++H++GELVP+LK AGALWL
Sbjct: 73 AVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
>Os07g0151100
Length = 127
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 65/94 (69%), Gaps = 5/94 (5%)
Query: 59 SPVLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAGEAALKGVVPAGGE-----AAALPAV 113
+ V+V GCC+ HVVKRLL GLGV PAV+E+ AA + A + +P V
Sbjct: 34 NAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLPPGQPPVPVV 93
Query: 114 FVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
FVGG+LLGG++++MA HI+G LVP+LK+AGALWL
Sbjct: 94 FVGGRLLGGVEKVMACHINGTLVPLLKQAGALWL 127
>Os12g0538700 Similar to AT.I.24-1 protein (Fragment)
Length = 104
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 61 VLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVA-----GEAALKGVVPAGGEAAALPAVFV 115
V++ C + H V L LGV AVHE+ G + + G + +PAVF+
Sbjct: 13 VVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFI 72
Query: 116 GGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
GKL+G DR+M++H++G+LVP+LK AGA+WL
Sbjct: 73 AGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
>Os05g0198200 Glutaredoxin-like, plant II family protein
Length = 138
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 59 SPVLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVAGEAALKGVVPAGGEAAALPAVFVGGK 118
SPV++ RRGCC+ HV++RLL +G + V E+ + A + + AAA+PA+FVGG
Sbjct: 52 SPVVIFARRGCCMCHVMRRLLAAVGAHATVIEL--DEAAEEAAASAAAAAAVPALFVGGA 109
Query: 119 LLGGLDRLMAVHISGELVPILKKAGALW 146
+GGLD LM +H+SG LVP L++ GAL
Sbjct: 110 PVGGLDGLMGLHLSGRLVPRLREVGALC 137
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,465,742
Number of extensions: 164162
Number of successful extensions: 641
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 14
Length of query: 147
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 56
Effective length of database: 12,284,327
Effective search space: 687922312
Effective search space used: 687922312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)