BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0370000 Os01g0370000|AK121554
(108 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0370000 Similar to Oxo-phytodienoic acid reductase 221 8e-59
Os01g0369900 Similar to Oxo-phytodienoic acid reductase 154 2e-38
Os06g0216300 Oxo-phytodienoic acid reductase (12-oxophytodi... 144 1e-35
Os06g0216200 Similar to Oxo-phytodienoic acid reductase 144 1e-35
Os06g0216000 Similar to Oxo-phytodienoic acid reductase 142 4e-35
Os06g0215500 Similar to Oxo-phytodienoic acid reductase 142 6e-35
Os06g0215600 Similar to Oxo-phytodienoic acid reductase 139 3e-34
Os06g0215900 Similar to Oxo-phytodienoic acid reductase 137 2e-33
Os02g0559400 Similar to Oxo-phytodienoic acid reductase 129 3e-31
AK106409 129 4e-31
AK102440 125 8e-30
AK067218 121 1e-28
Os08g0459600 Similar to 12-oxophytodienoate reductase 3 (EC... 114 1e-26
>Os01g0370000 Similar to Oxo-phytodienoic acid reductase
Length = 108
Score = 221 bits (564), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 SSRGACVSSIEEHRARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYG 60
SSRGACVSSIEEHRARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYG
Sbjct: 1 SSRGACVSSIEEHRARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYG 60
Query: 61 RLFLANPDLPERFRQKAALNAYDRSTFYTPDPVVGYTDYPFLEQPLAV 108
RLFLANPDLPERFRQKAALNAYDRSTFYTPDPVVGYTDYPFLEQPLAV
Sbjct: 61 RLFLANPDLPERFRQKAALNAYDRSTFYTPDPVVGYTDYPFLEQPLAV 108
>Os01g0369900 Similar to Oxo-phytodienoic acid reductase
Length = 317
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 82/98 (83%)
Query: 6 CVSSIEEHRARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLA 65
CV + E+ RLLPFR+AF GTF+VNGGYDR+EGDKAV DGYADLV+YGRLFLA
Sbjct: 211 CVGAGEDGSKPVIAHGRLLPFRKAFRGTFMVNGGYDRDEGDKAVADGYADLVAYGRLFLA 270
Query: 66 NPDLPERFRQKAALNAYDRSTFYTPDPVVGYTDYPFLE 103
NPDLPERFR+KA LN YDRSTFYT DPVVGYTDYPFL+
Sbjct: 271 NPDLPERFRRKAGLNKYDRSTFYTSDPVVGYTDYPFLD 308
>Os06g0216300 Oxo-phytodienoic acid reductase (12-oxophytodienoic acid reductase)
Length = 380
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 74/90 (82%)
Query: 15 ARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFR 74
RR + H LLPFR+ F+GTFI GGYDREEG+K V DGYADLV+YGRLFLANPDLP RF
Sbjct: 281 GRRKIAHGLLPFRKQFNGTFIAAGGYDREEGNKVVADGYADLVAYGRLFLANPDLPRRFE 340
Query: 75 QKAALNAYDRSTFYTPDPVVGYTDYPFLEQ 104
A LN YDRSTFYT DPVVGYTDYPFLE+
Sbjct: 341 LDAPLNRYDRSTFYTQDPVVGYTDYPFLEE 370
>Os06g0216200 Similar to Oxo-phytodienoic acid reductase
Length = 376
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 74/90 (82%)
Query: 15 ARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFR 74
RR + H LLPFR+ F+GTFI GGYDREEG+K V DGYADLV+YGRLFLANPDLP RF
Sbjct: 277 GRRKITHGLLPFRKQFNGTFIAAGGYDREEGNKVVADGYADLVAYGRLFLANPDLPRRFE 336
Query: 75 QKAALNAYDRSTFYTPDPVVGYTDYPFLEQ 104
A LN YDRSTFYT DPVVGYTDYPFLE+
Sbjct: 337 LDAPLNRYDRSTFYTQDPVVGYTDYPFLEE 366
>Os06g0216000 Similar to Oxo-phytodienoic acid reductase
Length = 405
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 74/91 (81%)
Query: 14 RARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERF 73
RR + H LLPFR+ F+GTFI +GGYDREEG+K V DGYADLV+YGRLFLANPDLP RF
Sbjct: 305 EGRRKINHGLLPFRKQFNGTFIASGGYDREEGNKVVDDGYADLVAYGRLFLANPDLPRRF 364
Query: 74 RQKAALNAYDRSTFYTPDPVVGYTDYPFLEQ 104
A LN YD STFYT DPVVGYTDYPFLE+
Sbjct: 365 ELNAPLNKYDGSTFYTHDPVVGYTDYPFLEE 395
>Os06g0215500 Similar to Oxo-phytodienoic acid reductase
Length = 391
Score = 142 bits (358), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 74/88 (84%)
Query: 15 ARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFR 74
RR + H LLPFR+ F+GTFI GGYDREEG+KAV DGYADLV+YGRLFLANPDLP+RF
Sbjct: 288 GRRQIQHGLLPFRKQFNGTFIAAGGYDREEGNKAVADGYADLVAYGRLFLANPDLPKRFE 347
Query: 75 QKAALNAYDRSTFYTPDPVVGYTDYPFL 102
A +N YDR+TFYT DPVVGYTDYPFL
Sbjct: 348 LDAPMNNYDRNTFYTQDPVVGYTDYPFL 375
>Os06g0215600 Similar to Oxo-phytodienoic acid reductase
Length = 374
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 74/90 (82%)
Query: 15 ARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFR 74
RR + H LLPFR+AF GTFI GGYDREEG+K + +GY DLVS+GRLFLANPDLP+RF
Sbjct: 276 GRRQIQHGLLPFRKAFKGTFIAAGGYDREEGNKVIENGYTDLVSFGRLFLANPDLPKRFE 335
Query: 75 QKAALNAYDRSTFYTPDPVVGYTDYPFLEQ 104
A LN YDR+TFYT DP+VGYTDYPFL++
Sbjct: 336 LDAPLNKYDRNTFYTQDPIVGYTDYPFLDE 365
>Os06g0215900 Similar to Oxo-phytodienoic acid reductase
Length = 374
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 73/90 (81%)
Query: 15 ARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFR 74
RR + H LLPFR+ F+GTFI GGYDREEG+K + DGYADLV+YGR FLANPDLP+RF
Sbjct: 276 GRRKITHGLLPFRKLFNGTFIAAGGYDREEGNKVIADGYADLVAYGRHFLANPDLPKRFA 335
Query: 75 QKAALNAYDRSTFYTPDPVVGYTDYPFLEQ 104
A LN Y+RSTFY DPVVGYTDYPFL++
Sbjct: 336 INAPLNKYNRSTFYIQDPVVGYTDYPFLDE 365
>Os02g0559400 Similar to Oxo-phytodienoic acid reductase
Length = 406
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 69/88 (78%)
Query: 15 ARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFR 74
+ +P++L FR+ F GTFIV GGY+REEG++AV GY DLV+YG+ FLANPDLP RF
Sbjct: 316 GKVQIPYKLWHFRKVFAGTFIVAGGYNREEGNRAVSQGYTDLVAYGKWFLANPDLPRRFE 375
Query: 75 QKAALNAYDRSTFYTPDPVVGYTDYPFL 102
A LN YDRSTFYT DPV+GYTDYPFL
Sbjct: 376 LNAPLNKYDRSTFYTSDPVIGYTDYPFL 403
>AK106409
Length = 406
Score = 129 bits (325), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 65/83 (78%)
Query: 19 VPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFRQKAA 78
+PHRL R AF GT +V GGYDREEG+ AV GYADLV YGRLFLANPDLP RFR A
Sbjct: 297 IPHRLRAVREAFAGTLMVGGGYDREEGNWAVAGGYADLVVYGRLFLANPDLPRRFRLGAP 356
Query: 79 LNAYDRSTFYTPDPVVGYTDYPF 101
LN YDR+TFYT DPV GYTDYPF
Sbjct: 357 LNGYDRATFYTADPVAGYTDYPF 379
>AK102440
Length = 367
Score = 125 bits (313), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 65/84 (77%)
Query: 19 VPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFRQKAA 78
PH L P R AF GTFI GGY++E+G+KAV GY DLV+YGRLFL+NPDLPERF A
Sbjct: 280 TPHSLRPIRDAFKGTFIAAGGYNKEDGNKAVSTGYTDLVAYGRLFLSNPDLPERFEIDAP 339
Query: 79 LNAYDRSTFYTPDPVVGYTDYPFL 102
LN Y+R TFY DPV+GYTDYPFL
Sbjct: 340 LNKYNRETFYISDPVIGYTDYPFL 363
>AK067218
Length = 376
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 16 RRNVPHRLLPFRRAFH-GTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFR 74
R +PHRL R AF G F+V GGYDR+ G+ AV GYAD+V +GRLFLANPDLP RF+
Sbjct: 277 RMMIPHRLHGMREAFRRGMFMVGGGYDRDAGNMAVASGYADMVVFGRLFLANPDLPRRFQ 336
Query: 75 QKAALNAYDRSTFYTPDPVVGYTDYPFLE 103
A LN YDR+TFYT DPVVGYTDYPFL+
Sbjct: 337 LDAPLNKYDRATFYTHDPVVGYTDYPFLD 365
>Os08g0459600 Similar to 12-oxophytodienoate reductase 3 (EC 1.3.1.42)
(12-oxophytodienoate- 10,11-reductase 3) (OPDA-reductase
3) (LeOPR3)
Length = 394
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 67/98 (68%), Gaps = 7/98 (7%)
Query: 8 SSIEEHRARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANP 67
S+ EE R R R + GTF+ +GGY RE G +AV G ADLVSYGRLF++NP
Sbjct: 300 SAEEESRLMRT-------LRGTYQGTFMCSGGYTRELGLEAVESGDADLVSYGRLFISNP 352
Query: 68 DLPERFRQKAALNAYDRSTFYTPDPVVGYTDYPFLEQP 105
DL ERFR A LN Y R TFYTPDPVVGYTDYPFL QP
Sbjct: 353 DLVERFRLNAGLNKYVRKTFYTPDPVVGYTDYPFLGQP 390
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.141 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,316,307
Number of extensions: 182589
Number of successful extensions: 350
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 13
Length of query: 108
Length of database: 17,035,801
Length adjustment: 76
Effective length of query: 32
Effective length of database: 13,067,537
Effective search space: 418161184
Effective search space used: 418161184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)