Os02g0559400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oxo-phytodienoic acid reductase.
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Os02g0559400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxo-phytodienoic acid reductase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.48 | 0.272 | 9.42 | 0.0354 | 0.552 | -0.619 | 0.128 | 0.326 | -0.376 | 19.9 | 81.05 | 789 | -- | -- |
| 33.63 | 0.27 | 9.42 | 0.057 | 0.557 | -0.631 | -0.000734 | -- | -0.374 | 19.8 | 81 | 811 | -- | -- |
| 33.36 | 0.269 | 9.42 | 0.0376 | 0.556 | -0.634 | -- | 0.416 | -0.386 | 19.7 | 82 | 804 | -- | -- |
| 33.37 | 0.269 | 9.42 | 0.0653 | 0.559 | -0.618 | -- | -- | -0.37 | 19.8 | 82.03 | 784 | -- | -- |
| 41.49 | 0.3 | 9.41 | 0.0577 | -- | -1.01 | -- | 0.257 | -0.389 | -- | 82.16 | 720 | -- | -- |
| 41.23 | 0.301 | 9.42 | 0.068 | 0.883 | -- | -0.0411 | -- | -0.344 | 20.3 | -- | -- | -- | -- |
| 41.23 | 0.301 | 9.42 | 0.0693 | 0.883 | -- | -- | -- | -0.344 | 20.3 | -- | -- | -- | -- |
| 41.66 | 0.301 | 9.41 | 0.0773 | -- | -1.01 | -- | -- | -0.386 | -- | 82.24 | 720 | -- | -- |
| 33.5 | 0.27 | 9.42 | -- | 0.552 | -0.611 | -- | -- | -0.379 | 19.9 | 82 | 778 | -- | -- |
| 84.38 | 0.429 | 9.4 | 0.063 | -- | -- | -- | -- | -0.354 | -- | -- | -- | -- | -- |
| 41.36 | 0.301 | 9.42 | -- | 0.883 | -- | -- | -- | -0.352 | 20.3 | -- | -- | -- | -- |
| 41.81 | 0.301 | 9.41 | -- | -- | -1.01 | -- | -- | -0.395 | -- | 82.39 | 720 | -- | -- |
| 84.49 | 0.429 | 9.4 | -- | -- | -- | -- | -- | -0.361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.03 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 2 | 31.04 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 6 | 31.19 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 11 | 31.38 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 12 | 31.42 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 38 | 31.78 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 55 | 31.93 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 92 | 32.28 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 93 | 32.29 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 114 | 32.43 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 6 |
| 180 | 32.76 | humidity | 80 | 720 | > th | dose independent | sin | 15 | NA |
| 199 | 32.86 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 6 |
| 229 | 32.96 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 17 |
| 239 | 33.00 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 12 |
| 247 | 33.02 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 20 |
| 271 | 33.08 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 286 | 33.13 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 11 |
| 288 | 33.14 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 15 |
| 356 | 33.28 | humidity | 80 | 720 | < th | dose independent | sin | 15 | NA |
| 361 | 33.28 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 384 | 33.30 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 11 |
| 460 | 33.44 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 475 | 33.44 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 16 |
| 505 | 33.48 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 652 | 33.78 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 20 |
| 653 | 33.78 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 692 | 33.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 758 | 33.96 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 17 |
| 759 | 33.96 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 22 |
| 769 | 33.98 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 23 |
| 770 | 33.98 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 23 |
| 781 | 34.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 784 | 34.00 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 806 | 34.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 823 | 34.05 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 834 | 34.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 15 |
| 878 | 34.12 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 936 | 34.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 1000 | 34.25 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 5 |