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Os06g0216200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oxo-phytodienoic acid reductase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.44 (0.0499) R2 : 0.648
β1 : 1.12 (0.2) R2dD : 0.0288 R2D : -0.0298
β2 : 2.8 (0.116) R2dC : 0.448 R2C : 0.453
β3 : 2.1 (0.156) R2dE : 0.208 R2E : 0.171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.147 (0.115) R2dN8 : 0.0025 R2N8 : 0.0151
σ : 0.909
deviance : 380.61
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C
peak time of C : 11.1
E
wheather : temperature
threshold : 19.8
memory length : 4385
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.18
open length of G : 0.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
379.94 0.916 9.44 1.13 2.79 2.1 0.635 0.0788 -0.148 11.1 19.98 4320 6.15 1.03
378.89 0.907 9.45 1.13 2.79 2.11 0.58 -- -0.151 11.1 19.94 4382 6.28 0.76
381.22 0.909 9.44 1.13 2.79 2.1 -- 0.0616 -0.146 11.1 19.96 4376 6.18 0.933
380.61 0.909 9.44 1.12 2.8 2.1 -- -- -0.147 11.1 19.8 4385 6.18 0.85
653.28 1.19 9.48 1.24 -- 2.21 -- 0.206 -0.361 -- 28.27 4878 6.33 1.03
534.15 1.08 9.6 -0.205 2.8 -- 0.755 -- -0.843 11.2 -- -- -- --
536.58 1.08 9.6 -0.174 2.8 -- -- -- -0.84 11.2 -- -- -- --
524.84 1.07 9.6 -0.102 -- 2.75 -- -- -0.658 -- 31.5 4892 2.67 7.69
403.09 0.935 9.44 -- 2.79 2.1 -- -- -0.147 11.1 19.8 4416 6.07 0.769
1024.7 1.5 9.67 -0.241 -- -- -- -- -0.865 -- -- -- -- --
537.38 1.08 9.59 -- 2.8 -- -- -- -0.821 11.2 -- -- -- --
511.95 1.05 9.68 -- -- 3.36 -- -- -0.905 -- 30.67 4897 2.8 7.45
1026.24 1.5 9.66 -- -- -- -- -- -0.838 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 370.06 wind 1.0 14400 < th dose dependent rect. 22 10
11 376.63 wind 1.0 14400 < th dose dependent rect. 23 4
16 378.41 atmosphere 1015.0 43200 < th dose independent rect. 23 1
17 378.44 atmosphere 1015.0 43200 > th dose independent rect. 23 1
18 378.64 wind 1.0 14400 < th dose independent rect. 23 4
19 378.71 wind 1.0 14400 < th dose dependent rect. 5 3
33 380.48 wind 3.0 43200 < th dose dependent rect. 22 1
37 380.95 wind 1.0 14400 < th dose independent rect. 22 11
38 380.96 atmosphere 1015.0 43200 > th dose independent rect. 19 5
43 381.28 wind 1.0 14400 > th dose independent rect. 23 3
44 381.32 wind 1.0 14400 < th dose dependent sin 9 NA
60 382.19 atmosphere 1015.0 43200 > th dose independent rect. 20 1
68 382.39 wind 1.0 14400 > th dose independent rect. 6 2
71 382.46 wind 1.0 14400 > th dose independent rect. 22 10
75 382.68 temperature 20.0 4320 < th dose independent rect. 6 1
88 383.19 wind 1.0 14400 < th dose independent rect. 6 2
130 384.61 precipitation 0.1 43200 < th dose independent rect. 1 7
131 384.61 precipitation 0.1 43200 < th dose dependent rect. 1 7
132 384.62 precipitation 0.1 43200 > th dose independent rect. 1 7
161 385.40 precipitation 0.1 43200 > th dose independent rect. 23 9
174 385.68 precipitation 0.1 43200 < th dose independent rect. 23 9
175 385.68 precipitation 0.1 43200 < th dose dependent rect. 23 9
213 386.31 atmosphere 1010.0 43200 > th dose dependent rect. 16 1
225 386.46 atmosphere 1015.0 43200 < th dose independent sin 13 NA
239 386.60 precipitation 0.1 43200 > th dose dependent rect. 1 7
270 386.91 precipitation 0.1 43200 > th dose dependent rect. 23 9
275 386.97 atmosphere 1015.0 43200 > th dose independent sin 13 NA
342 387.55 atmosphere 1010.0 43200 > th dose dependent rect. 11 7
391 387.93 atmosphere 1010.0 43200 > th dose dependent rect. 11 3
398 387.98 temperature 20.0 4320 > th dose independent rect. 6 1
404 388.06 atmosphere 1010.0 43200 > th dose dependent rect. 13 1
408 388.09 humidity 60.0 43200 > th dose independent rect. 22 11
426 388.19 atmosphere 1010.0 43200 > th dose dependent rect. 7 12
452 388.32 atmosphere 1010.0 43200 > th dose dependent rect. 7 1
525 388.73 humidity 60.0 43200 < th dose independent rect. 2 7
526 388.73 atmosphere 1010.0 43200 > th dose dependent sin 0 NA
546 388.85 humidity 60.0 43200 < th dose independent rect. 20 14
548 388.86 humidity 60.0 43200 > th dose independent rect. 2 7
556 388.90 humidity 60.0 43200 > th dose independent rect. 8 1
628 389.21 humidity 80.0 14400 > th dose dependent rect. 5 1
643 389.27 humidity 60.0 43200 < th dose independent rect. 22 11
759 389.83 humidity 70.0 43200 < th dose dependent rect. 22 11
774 389.90 humidity 80.0 14400 > th dose dependent rect. 2 5
845 390.25 atmosphere 1015.0 43200 < th dose independent rect. 4 21
857 390.28 atmosphere 1015.0 43200 > th dose dependent rect. 21 10
868 390.33 humidity 90.0 14400 < th dose independent rect. 24 1
898 390.42 atmosphere 1015.0 43200 < th dose independent rect. 4 4
901 390.43 atmosphere 1015.0 43200 > th dose independent rect. 5 2
957 390.59 atmosphere 1010.0 43200 > th dose dependent no NA NA
966 390.63 atmosphere 1015.0 43200 > th dose independent rect. 3 22
970 390.63 atmosphere 1010.0 43200 > th dose dependent rect. 11 23
982 390.65 atmosphere 1010.0 43200 > th dose dependent rect. 9 23
986 390.67 atmosphere 1010.0 43200 > th dose dependent rect. 15 23
993 390.69 atmosphere 1010.0 43200 > th dose dependent rect. 13 23