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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0215500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oxo-phytodienoic acid reductase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.027) R2 : 0.00242
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0598 (0.0568) R2dN8 : 0.00313 R2N8 : 0.00242
σ : 0.508
deviance : 118.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.17 0.495 3.3 0.141 0.271 1.13 -0.536 -0.876 0.092 4.99 8.759 134 -- --
111.2 0.491 3.3 0.147 0.271 1.34 -0.516 -- 0.0922 5.03 8.8 133 -- --
111.77 0.492 3.3 0.139 0.269 1.14 -- -0.384 0.092 5.59 8.7 133 -- --
111.77 0.492 3.3 0.141 0.268 1.23 -- -- 0.0921 5.58 8.733 133 -- --
115.44 0.5 3.3 0.136 -- 0.964 -- -0.382 0.0962 -- 8.8 133 -- --
115.51 0.504 3.31 0.064 0.23 -- -0.217 -- 0.0612 5.61 -- -- -- --
115.6 0.504 3.31 0.0635 0.23 -- -- -- 0.0623 5.94 -- -- -- --
115.45 0.5 3.31 0.138 -- 1.06 -- -- 0.0937 -- 8.703 133 -- --
112.28 0.494 3.3 -- 0.267 1.15 -- -- 0.0798 5.56 8.753 133 -- --
118.34 0.508 3.31 0.0704 -- -- -- -- 0.0676 -- -- -- -- --
115.71 0.503 3.31 -- 0.231 -- -- -- 0.0552 5.92 -- -- -- --
115.94 0.501 3.31 -- -- 0.984 -- -- 0.0809 -- 8.8 133 -- --
118.47 0.508 3.31 -- -- -- -- -- 0.0598 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.60 atmosphere 995.0 30 > th dose independent rect. 3 23
2 100.87 radiation 1.0 43200 < th dose dependent rect. 3 1
6 101.98 wind 9.0 30 < th dose independent rect. 3 23
8 102.05 atmosphere 1005.0 90 > th dose dependent rect. 2 1
9 102.06 radiation 1.0 4320 < th dose dependent rect. 3 1
13 102.13 temperature 25.0 90 > th dose independent rect. 2 1
15 102.15 temperature 25.0 90 > th dose dependent rect. 2 1
24 102.21 wind 9.0 1440 < th dose independent rect. 3 1
25 102.21 temperature 10.0 1440 > th dose independent rect. 3 1
28 102.21 temperature 30.0 1440 < th dose independent rect. 3 1
32 102.21 humidity 50.0 1440 > th dose independent rect. 3 1
41 102.21 atmosphere 995.0 1440 > th dose independent rect. 3 1
42 102.21 radiation 1.0 1440 < th dose independent rect. 3 1
62 102.21 temperature 10.0 1440 > th dose independent rect. 4 23
71 102.27 temperature 25.0 90 > th dose dependent rect. 1 3
78 102.41 wind 3.0 30 < th dose independent rect. 2 1
79 102.41 wind 3.0 30 < th dose dependent rect. 2 1
84 102.43 atmosphere 1005.0 30 > th dose independent rect. 2 1
89 102.47 humidity 90.0 30 > th dose independent rect. 2 1
91 102.48 humidity 50.0 30 > th dose dependent rect. 2 1
95 102.49 temperature 10.0 30 > th dose independent rect. 2 1
97 102.49 temperature 30.0 30 < th dose independent rect. 2 1
98 102.49 humidity 50.0 30 > th dose independent rect. 2 1
102 102.49 atmosphere 1010.0 30 < th dose independent rect. 2 1
104 102.49 radiation 1.0 30 < th dose independent rect. 2 1
109 102.49 precipitation 0.1 30 < th dose independent rect. 2 1
110 102.49 temperature 10.0 30 > th dose independent rect. 3 23
112 102.49 radiation 1.0 30 < th dose dependent rect. 2 1
117 102.49 precipitation 0.1 30 < th dose dependent rect. 2 1
123 102.59 atmosphere 1015.0 30 < th dose dependent rect. 2 1
124 102.60 precipitation 0.1 30 < th dose independent rect. 3 23
125 102.60 precipitation 0.1 30 < th dose dependent rect. 3 23
127 102.73 temperature 30.0 30 < th dose dependent rect. 2 1
128 102.76 wind 1.0 30 > th dose independent rect. 2 1
198 104.86 humidity 50.0 30 > th dose independent rect. 3 23
236 105.87 wind 5.0 90 > th dose dependent rect. 2 1
237 105.88 wind 5.0 90 > th dose independent rect. 2 1
242 106.33 wind 7.0 90 > th dose dependent rect. 16 1
250 106.79 wind 9.0 90 > th dose independent rect. 16 1
262 106.94 wind 7.0 10 > th dose independent rect. 17 1
263 106.94 atmosphere 995.0 720 > th dose independent rect. 23 16
266 107.04 wind 7.0 90 > th dose dependent rect. 16 5
276 107.36 temperature 10.0 30 > th dose dependent rect. 3 23
279 107.41 wind 5.0 10 > th dose dependent rect. 17 1
281 107.44 wind 9.0 90 > th dose independent rect. 16 5
282 107.45 wind 9.0 90 > th dose independent rect. 16 3
284 107.48 wind 9.0 720 < th dose independent rect. 23 16
287 107.53 wind 9.0 90 > th dose independent rect. 16 7
295 107.62 wind 9.0 90 > th dose independent rect. 16 18
307 107.69 wind 9.0 720 < th dose independent rect. 3 8
308 107.72 temperature 10.0 720 > th dose independent rect. 15 8
309 107.72 temperature 10.0 720 > th dose independent rect. 23 16
315 107.90 precipitation 0.1 720 < th dose independent rect. 15 8
316 107.90 precipitation 0.1 720 < th dose dependent rect. 15 8
335 108.05 temperature 10.0 720 > th dose independent rect. 3 8
336 108.05 atmosphere 995.0 720 > th dose independent rect. 3 8
337 108.05 temperature 10.0 720 > th dose independent rect. 11 16
342 108.09 humidity 90.0 90 < th dose independent rect. 2 1
369 108.31 radiation 40.0 720 < th dose independent rect. 15 8
383 108.42 wind 1.0 30 < th dose independent rect. 23 4
390 108.47 wind 1.0 30 < th dose independent rect. 17 10
416 108.59 humidity 50.0 720 > th dose independent rect. 3 8
418 108.60 wind 1.0 30 < th dose independent rect. 13 14
429 108.64 wind 5.0 270 > th dose dependent rect. 1 6
444 108.76 wind 5.0 270 > th dose independent rect. 1 6
465 108.81 atmosphere 1015.0 30 < th dose independent rect. 3 23
472 108.83 wind 7.0 10 < th dose independent rect. 16 10
499 108.95 wind 9.0 90 < th dose independent sin 14 NA
503 108.96 wind 9.0 90 > th dose independent sin 13 NA
514 109.00 temperature 15.0 30 > th dose independent rect. 18 8
517 109.00 wind 7.0 10 < th dose independent rect. 14 12
529 109.03 wind 9.0 30 < th dose dependent rect. 3 23
534 109.07 atmosphere 1015.0 720 < th dose independent rect. 3 8
582 109.32 precipitation 0.1 720 < th dose independent rect. 23 16
583 109.32 precipitation 0.1 720 < th dose dependent rect. 23 16
627 109.42 wind 1.0 720 > th dose independent rect. 15 8
670 109.47 radiation 1.0 30 < th dose independent rect. 2 16
673 109.48 wind 9.0 90 > th dose dependent sin 13 NA
675 109.49 wind 3.0 270 < th dose independent rect. 23 4
698 109.56 radiation 10.0 43200 < th dose dependent rect. 19 8
700 109.57 temperature 30.0 30 < th dose independent rect. 3 23
720 109.60 atmosphere 1000.0 30 > th dose independent rect. 18 8
729 109.62 precipitation 0.1 720 < th dose independent rect. 11 16
730 109.62 precipitation 0.1 720 < th dose dependent rect. 11 16
736 109.67 wind 9.0 10 > th dose dependent sin 12 NA
744 109.69 precipitation 0.1 720 < th dose independent rect. 3 8
745 109.69 precipitation 0.1 720 < th dose dependent rect. 3 8
752 109.71 radiation 1.0 10 < th dose dependent rect. 2 16
756 109.73 wind 1.0 30 > th dose independent rect. 3 23
827 109.81 wind 1.0 30 > th dose independent rect. 18 8
843 109.84 wind 9.0 720 < th dose independent rect. 7 8
950 109.99 atmosphere 995.0 720 > th dose independent rect. 7 8
986 110.02 temperature 25.0 1440 < th dose independent rect. 1 1
988 110.02 wind 9.0 30 < th dose independent rect. 18 8
989 110.02 atmosphere 995.0 720 > th dose independent rect. 15 8
998 110.04 humidity 50.0 30 > th dose independent rect. 18 8
999 110.04 radiation 20.0 30 < th dose independent rect. 18 8