Os06g0216300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oxo-phytodienoic acid reductase (12-oxophytodienoic acid reductase).
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Os06g0216300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oxo-phytodienoic acid reductase (12-oxophytodienoic acid reductase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 391.72 | 0.93 | 8.37 | 1.13 | 2.91 | 1.9 | 0.566 | -0.296 | -0.0566 | 11.2 | 19.7 | 4371 | 6.12 | 0.764 |
| 392.11 | 0.922 | 8.37 | 1.04 | 2.92 | 1.9 | 0.597 | -- | -0.0545 | 11.1 | 19.7 | 4372 | 6.13 | 0.762 |
| 393.03 | 0.923 | 8.37 | 1.13 | 2.9 | 1.9 | -- | -0.295 | -0.0611 | 11.2 | 19.7 | 4390 | 6.12 | 0.757 |
| 393.4 | 0.924 | 8.37 | 1.03 | 2.93 | 1.92 | -- | -- | -0.0877 | 11.2 | 19.71 | 4391 | 6.13 | 0.766 |
| 635.51 | 1.17 | 8.44 | 0.294 | -- | 2.66 | -- | -0.406 | -0.219 | -- | 28.07 | 4884 | 6.21 | 1.12 |
| 535.79 | 1.09 | 8.53 | -0.0814 | 2.92 | -- | 0.666 | -- | -0.72 | 11.2 | -- | -- | -- | -- |
| 537.69 | 1.09 | 8.52 | -0.0542 | 2.91 | -- | -- | -- | -0.718 | 11.2 | -- | -- | -- | -- |
| 610.04 | 1.15 | 8.57 | 0.44 | -- | 2.74 | -- | -- | -0.641 | -- | 28.27 | 4879 | 6.33 | 1.12 |
| 418.71 | 0.953 | 8.38 | -- | 2.94 | 1.98 | -- | -- | -0.149 | 11.2 | 19.71 | 4413 | 6.05 | 0.811 |
| 1068.53 | 1.53 | 8.59 | -0.126 | -- | -- | -- | -- | -0.744 | -- | -- | -- | -- | -- |
| 537.77 | 1.08 | 8.52 | -- | 2.91 | -- | -- | -- | -0.712 | 11.2 | -- | -- | -- | -- |
| 570.96 | 1.11 | 8.56 | -- | -- | 2.74 | -- | -- | -0.629 | -- | 28.1 | 33768 | 6.33 | 1.13 |
| 1068.95 | 1.53 | 8.59 | -- | -- | -- | -- | -- | -0.73 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 375.68 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 10 | 381.15 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 11 | 381.69 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 15 | 383.07 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 20 | 384.01 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 23 | 384.63 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 27 | 385.29 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 34 | 385.95 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 36 | 386.10 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 38 | 386.20 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 43 | 386.41 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 44 | 386.42 | wind | 1.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 54 | 387.06 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 73 | 388.84 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 109 | 390.25 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 120 | 390.78 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 173 | 392.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 175 | 392.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 180 | 392.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 201 | 393.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 210 | 393.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 211 | 393.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 238 | 393.90 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 260 | 394.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 271 | 394.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 309 | 395.11 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 327 | 395.34 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 352 | 395.59 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 22 |
| 364 | 395.72 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 380 | 395.91 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 402 | 396.14 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 22 |
| 413 | 396.22 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 437 | 396.40 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 473 | 396.82 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 17 |
| 486 | 396.99 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 551 | 397.59 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 11 | 7 |
| 555 | 397.61 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 614 | 398.06 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 617 | 398.08 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 622 | 398.10 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 7 | 11 |
| 644 | 398.20 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 660 | 398.29 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 669 | 398.33 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 22 |
| 709 | 398.51 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 745 | 398.63 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 765 | 398.73 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 0 | NA |
| 771 | 398.76 | wind | 1.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 777 | 398.78 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 790 | 398.83 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 805 | 398.87 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 4 | 21 |
| 812 | 398.90 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 821 | 398.93 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 823 | 398.93 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 832 | 398.96 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 856 | 399.01 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 871 | 399.05 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 21 | 10 |
| 898 | 399.16 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 920 | 399.22 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 948 | 399.32 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 955 | 399.34 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 4 | 21 |
| 989 | 399.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 1 |