Os06g0216000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oxo-phytodienoic acid reductase.
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Os06g0216000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxo-phytodienoic acid reductase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 366.72 | 0.9 | 8.27 | 2.68 | 1.07 | -0.938 | 0.754 | -5.46 | -4.7 | 11.5 | 20.6 | 1312 | -- | -- |
| 381.08 | 0.909 | 8.2 | 4.2 | 1.04 | -1.21 | 1.27 | -- | -4.73 | 11.2 | 30.71 | 1239 | -- | -- |
| 364.46 | 0.889 | 8.3 | 2.52 | 0.932 | -0.922 | -- | -6.8 | -4.76 | 12.1 | 20.93 | 969 | -- | -- |
| 383.76 | 0.912 | 8.2 | 4.21 | 1.05 | -1.17 | -- | -- | -4.77 | 11.5 | 30.7 | 1280 | -- | -- |
| 412.24 | 0.946 | 8.28 | 2.82 | -- | -1.43 | -- | -6.25 | -4.64 | -- | 20.93 | 942 | -- | -- |
| 444.92 | 0.989 | 8.15 | 3.83 | 1.2 | -- | 1.18 | -- | -4.55 | 11.8 | -- | -- | -- | -- |
| 450.97 | 0.994 | 8.14 | 3.87 | 1.2 | -- | -- | -- | -4.54 | 11.9 | -- | -- | -- | -- |
| 435.17 | 0.972 | 8.14 | 4.29 | -- | -1.81 | -- | -- | -4.37 | -- | 24.7 | 980 | -- | -- |
| 824.12 | 1.34 | 8.27 | -- | 1.05 | -0.757 | -- | -- | -5.09 | 11.7 | 33.6 | 943 | -- | -- |
| 540.99 | 1.09 | 8.17 | 3.84 | -- | -- | -- | -- | -4.56 | -- | -- | -- | -- | -- |
| 846.57 | 1.36 | 8.24 | -- | 1.15 | -- | -- | -- | -4.97 | 11.7 | -- | -- | -- | -- |
| 890.49 | 1.39 | 8.3 | -- | -- | -0.99 | -- | -- | -5.15 | -- | 33.3 | 935 | -- | -- |
| 929.58 | 1.42 | 8.27 | -- | -- | -- | -- | -- | -4.98 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 359.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 3 | 360.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 7 | 360.32 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 16 | 360.88 | temperature | 20 | 10 | > th | dose dependent | sin | 12 | NA |
| 21 | 361.02 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 39 | 361.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 49 | 361.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 60 | 362.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 130 | 363.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 190 | 364.91 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 235 | 365.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 243 | 365.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 246 | 365.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 247 | 365.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 280 | 366.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 302 | 366.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 322 | 366.67 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 327 | 366.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 339 | 366.81 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 376 | 367.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 377 | 367.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 381 | 367.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 423 | 367.34 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 442 | 367.44 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 517 | 367.78 | temperature | 10 | 270 | > th | dose dependent | sin | 14 | NA |
| 600 | 368.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 613 | 368.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 693 | 368.60 | temperature | 30 | 10 | < th | dose dependent | sin | 13 | NA |
| 735 | 368.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 844 | 369.28 | temperature | 10 | 10 | > th | dose dependent | sin | 12 | NA |