BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0216000 Os06g0216000|Os06g0216000
(405 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G76690.1 | chr1:28778976-28780355 FORWARD LENGTH=375 315 2e-86
AT1G09400.1 | chr1:3033676-3034993 REVERSE LENGTH=325 297 8e-81
AT1G76680.2 | chr1:28776982-28778271 FORWARD LENGTH=398 296 2e-80
AT2G06050.2 | chr2:2359240-2361971 REVERSE LENGTH=392 262 3e-70
AT1G18020.1 | chr1:6202272-6203572 FORWARD LENGTH=270 186 1e-47
AT1G17990.1 | chr1:6192455-6193755 REVERSE LENGTH=270 186 1e-47
>AT1G76690.1 | chr1:28778976-28780355 FORWARD LENGTH=375
Length = 374
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 156/259 (60%), Positives = 186/259 (71%), Gaps = 6/259 (2%)
Query: 141 KSGERDQQPNGQAPISSTDKQITPD-----DSHTVYSKPRRLRTDEIPHVVDDFRVAARN 195
+ R QP QAPIS T K I P ++ PRRL +EIP +V+DFR+AARN
Sbjct: 114 RVSNRGFQPRRQAPISCTGKPIMPQMRANGIDEARFTPPRRLSIEEIPGIVNDFRLAARN 173
Query: 196 AIEAGFDGVEIHGAHGYLIDQFMKDSANGRTDQYGGSLENRCRFXXXXXXXXXXXXXXXR 255
A+EAGFDGVEIHGAHGYLIDQFMKD N RTD+YGGSL+NRC+F R
Sbjct: 174 AMEAGFDGVEIHGAHGYLIDQFMKDKVNDRTDEYGGSLQNRCKFALEVVDAVAKEIGPDR 233
Query: 256 VGIRLSPYIDFMDCFDSNPEALGSYMVRQLNKHPELLYCHMVEPRMATVEGRRKINHGLL 315
VGIRLSP+ D+M+ D+NPEALG YMV LNK+ +LYCHM+EPRM TV +H L+
Sbjct: 234 VGIRLSPFADYMESGDTNPEALGLYMVESLNKY-GILYCHMIEPRMKTVGEIAACSHTLM 292
Query: 316 PFRKQFNGTFIASGGYDREEGNKVVDDGYADLVAYGRLFLANPDLPRRFELNAPLNKYDG 375
P R+ F GTFI++GG+ RE+GN+ V G DLVAYGR FLANPDLP+RF+L+APLNKY+
Sbjct: 293 PMREAFKGTFISAGGFTREDGNEAVAKGRTDLVAYGRWFLANPDLPKRFQLDAPLNKYNR 352
Query: 376 STFYTHDPVVGYTDYPFLE 394
STFYT DPVVGYTDYP LE
Sbjct: 353 STFYTSDPVVGYTDYPSLE 371
>AT1G09400.1 | chr1:3033676-3034993 REVERSE LENGTH=325
Length = 324
Score = 297 bits (760), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 145/232 (62%), Positives = 171/232 (73%), Gaps = 2/232 (0%)
Query: 141 KSGERDQQPNGQAPISSTDKQITPDDSHTVYSKPRRLRTDEIPHVVDDFRVAARNAIEAG 200
+ +D QPNG++P+SSTDK DD ++ PRRLRTDEIP +++DFR+AARNA EAG
Sbjct: 95 RVSHQDCQPNGESPVSSTDKPFA-DDPSNEFTPPRRLRTDEIPTIINDFRLAARNATEAG 153
Query: 201 FDGVEIHGAHGYLIDQFMKDSANGRTDQYGGSLENRCRFXXXXXXXXXXXXXXXRVGIRL 260
FDGVEIHGAHGYLIDQFMKDS N RTD YGGSLENRCRF RVGIRL
Sbjct: 154 FDGVEIHGAHGYLIDQFMKDSVNDRTDSYGGSLENRCRFALQVIEAVSKEIGPDRVGIRL 213
Query: 261 SPYIDFMDCFDSNPEALGSYMVRQLNKHPELLYCHMVEPRMATVEGRRKINHGLLPFRKQ 320
SP+ D+M+ D++P+ LG YM + LN+ E+LYCHM+EPRM TV + L P R
Sbjct: 214 SPFADYMESGDTDPKRLGLYMAKSLNRF-EILYCHMIEPRMKTVSEIFECRESLTPMRNA 272
Query: 321 FNGTFIASGGYDREEGNKVVDDGYADLVAYGRLFLANPDLPRRFELNAPLNK 372
FNGTFI +GGY RE+GNK V +G DLVAYGRLFLANPDLP+RFELNAPLNK
Sbjct: 273 FNGTFIVAGGYTREDGNKAVAEGRTDLVAYGRLFLANPDLPKRFELNAPLNK 324
>AT1G76680.2 | chr1:28776982-28778271 FORWARD LENGTH=398
Length = 397
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/278 (53%), Positives = 185/278 (66%), Gaps = 31/278 (11%)
Query: 148 QPNGQAPISSTDKQITPDD-----SHTVYSKPRRLRTDEIPHVVDDFRVAARNAIEAG-- 200
QPNG+APIS +DK + P +++ PRRL +EIP +V+DFR+AARNA+EAG
Sbjct: 119 QPNGKAPISCSDKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGKH 178
Query: 201 -----------------------FDGVEIHGAHGYLIDQFMKDSANGRTDQYGGSLENRC 237
FDGVEIHGA+GYLIDQFMKD+ N RTD+YGGSL+NRC
Sbjct: 179 ILDLEFKKLKPFKILICVLVVAGFDGVEIHGANGYLIDQFMKDTVNDRTDEYGGSLQNRC 238
Query: 238 RFXXXXXXXXXXXXXXXRVGIRLSPYIDFMDCFDSNPEALGSYMVRQLNKHPELLYCHMV 297
+F RVGIRLSP+ D+M+ D+NP ALG YM LNK+ +LYCH++
Sbjct: 239 KFPLEIVDAVAKEIGPDRVGIRLSPFADYMESGDTNPGALGLYMAESLNKY-GILYCHVI 297
Query: 298 EPRMATVEGRRKINHGLLPFRKQFNGTFIASGGYDREEGNKVVDDGYADLVAYGRLFLAN 357
E RM T+ H L+P RK F GTFI++GG+ RE+GN+ V G DLVAYGR FLAN
Sbjct: 298 EARMKTMGEVHACPHTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLVAYGRWFLAN 357
Query: 358 PDLPRRFELNAPLNKYDGSTFYTHDPVVGYTDYPFLEE 395
PDLP+RF+++APLNKYD TFYT DPVVGYTDYPFLE
Sbjct: 358 PDLPKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFLES 395
>AT2G06050.2 | chr2:2359240-2361971 REVERSE LENGTH=392
Length = 391
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/267 (51%), Positives = 173/267 (64%), Gaps = 21/267 (7%)
Query: 148 QPNGQAPISSTDKQIT--------PDDSHTVYSKPRRLRTDEIPHVVDDFRVAARNAIEA 199
QPNG +PISST+K I+ PD SH Y KPR L EIP VV+D+ ++A NAI A
Sbjct: 119 QPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCLSALNAIRA 178
Query: 200 GFDGVEIHGAHGYLIDQFMKDSANGRTDQYGGSLENRCRFXXXXXXXXXXXXXXXRVGIR 259
GFDG+EIHGAHGYLIDQF+KD N RTDQYGGS+ NRCRF +VG+R
Sbjct: 179 GFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVR 238
Query: 260 LSPYIDFMDCFDSNPEALGSYMVRQLNK-----HPELLYCHMVEPRM----ATVEGRRKI 310
+SP ID +D DS+P +LG +V LNK +L Y H+ +PR T GR+
Sbjct: 239 VSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGS 298
Query: 311 NHG----LLPFRKQFNGTFIASGGYDREEGNKVVDDGYADLVAYGRLFLANPDLPRRFEL 366
+ + R +NGTF++SGG+++E G + V G ADLV+YGRLF+ANPDL RF++
Sbjct: 299 DEEEAKLMKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKI 358
Query: 367 NAPLNKYDGSTFYTHDPVVGYTDYPFL 393
+ LNKY+ TFYT DPVVGYTDYPFL
Sbjct: 359 DGELNKYNRKTFYTQDPVVGYTDYPFL 385
>AT1G18020.1 | chr1:6202272-6203572 FORWARD LENGTH=270
Length = 269
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
Query: 148 QPNGQAPISSTDKQITPDDSHT-VYSKPRRLRTDEIPHVVDDFRVAARNAIEAGFDGVEI 206
QPNG+AP+SSTDK + + + + PRRLR+DE+P +V+DFR+AARNAIEAGFDGVE+
Sbjct: 115 QPNGEAPVSSTDKPLMCKNMYGGQFKPPRRLRSDELPAIVNDFRIAARNAIEAGFDGVEV 174
Query: 207 HGAHGYLIDQFMKDSANGRTDQYGGSLENRCRFXXXXXXXXXXXXXXXRVGIRLSPYIDF 266
HGAHGYLIDQF+KD N R+DQYGGSLENRCRF RVGIRLSP+ D+
Sbjct: 175 HGAHGYLIDQFLKDKVNDRSDQYGGSLENRCRFALEVIEAVVNEIGSDRVGIRLSPFADY 234
Query: 267 MDCFDSNPEALGSYMVRQLNKH 288
M+ DSNPEALG Y+V+ +NKH
Sbjct: 235 MESGDSNPEALGLYLVQAMNKH 256
>AT1G17990.1 | chr1:6192455-6193755 REVERSE LENGTH=270
Length = 269
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
Query: 148 QPNGQAPISSTDKQITPDDSHT-VYSKPRRLRTDEIPHVVDDFRVAARNAIEAGFDGVEI 206
QPNG+AP+SSTDK + + + + PRRLR+DE+P +V+DFR+AARNAIEAGFDGVE+
Sbjct: 115 QPNGEAPVSSTDKPLMCKNMYGGQFKPPRRLRSDELPAIVNDFRIAARNAIEAGFDGVEV 174
Query: 207 HGAHGYLIDQFMKDSANGRTDQYGGSLENRCRFXXXXXXXXXXXXXXXRVGIRLSPYIDF 266
HGAHGYLIDQF+KD N R+DQYGGSLENRCRF RVGIRLSP+ D+
Sbjct: 175 HGAHGYLIDQFLKDKVNDRSDQYGGSLENRCRFALEVIEAVVNEIGSDRVGIRLSPFADY 234
Query: 267 MDCFDSNPEALGSYMVRQLNKH 288
M+ DSNPEALG Y+V+ +NKH
Sbjct: 235 MESGDSNPEALGLYLVQAMNKH 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,020,650
Number of extensions: 318869
Number of successful extensions: 728
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 6
Length of query: 405
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,337,553
Effective search space: 2534616112
Effective search space used: 2534616112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)