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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0370000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oxo-phytodienoic acid reductase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.54 (0.0389) R2 : 0.373
β1 : -1.95 (0.147) R2dD : 0.272 R2D : 0.13
β2 : 0.742 (0.0979) R2dC : 0.0778 R2C : 0.0484
β3 : 1 (0.112) R2dE : 0.118 R2E : 0.00641
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.515 (0.0831) R2dN8 : 0.0704 R2N8 : 0.00155
σ : 0.726
deviance : 243
__
_____
C
peak time of C : 8.43
E
wheather : temperature
threshold : 26.11
memory length : 1269
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.59 0.724 5.64 -2.79 0.735 1.35 -0.933 -3.45 -0.699 8.41 26.2 1285 -- --
241.5 0.724 5.56 -2.03 0.723 1.1 -0.69 -- -0.606 8.58 25.17 1299 -- --
240.26 0.722 5.64 -2.78 0.736 1.34 -- -3.33 -0.684 8.38 26.37 1287 -- --
243 0.726 5.54 -1.95 0.742 1 -- -- -0.515 8.43 26.11 1269 -- --
269.23 0.764 5.65 -2.75 -- 1.27 -- -3.07 -0.67 -- 26.29 1353 -- --
281.86 0.787 5.53 -1.62 0.71 -- -0.899 -- -0.46 7.71 -- -- -- --
284.12 0.789 5.53 -1.64 0.712 -- -- -- -0.46 7.55 -- -- -- --
271.38 0.767 5.56 -1.96 -- 0.94 -- -- -0.516 -- 25.97 1353 -- --
337.16 0.855 5.48 -- 0.706 0.61 -- -- -0.233 8.47 27.8 1253 -- --
311.29 0.824 5.54 -1.63 -- -- -- -- -0.449 -- -- -- -- --
355.22 0.882 5.49 -- 0.699 -- -- -- -0.277 7.71 -- -- -- --
364.73 0.889 5.49 -- -- 0.583 -- -- -0.225 -- 27.7 1299 -- --
381.56 0.912 5.5 -- -- -- -- -- -0.268 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 226.55 temperature 15.0 30 > th dose dependent rect. 4 5
2 226.58 temperature 15.0 270 > th dose dependent rect. 3 4
8 228.43 radiation 30.0 90 < th dose independent rect. 4 5
10 228.64 wind 9.0 90 < th dose dependent rect. 16 17
17 229.34 wind 9.0 10 < th dose dependent rect. 16 17
18 229.62 radiation 30.0 90 < th dose independent rect. 4 18
23 230.29 wind 7.0 90 < th dose dependent rect. 4 5
24 230.36 temperature 20.0 30 > th dose independent rect. 4 5
29 230.57 temperature 10.0 10 > th dose dependent rect. 16 17
31 230.80 humidity 90.0 270 > th dose independent rect. 4 1
35 231.09 wind 5.0 30 < th dose independent rect. 4 5
41 231.34 precipitation 0.1 30 < th dose independent rect. 4 5
42 231.34 precipitation 0.1 30 < th dose dependent rect. 4 5
43 231.40 wind 9.0 30 < th dose independent rect. 4 5
44 231.40 temperature 10.0 30 > th dose independent rect. 4 5
46 231.40 temperature 30.0 30 < th dose independent rect. 4 5
47 231.40 humidity 50.0 30 > th dose independent rect. 4 5
49 231.40 atmosphere 995.0 30 > th dose independent rect. 4 5
50 231.40 atmosphere 1015.0 30 < th dose independent rect. 4 5
51 231.40 temperature 10.0 30 > th dose independent rect. 9 19
58 231.61 radiation 40.0 10 < th dose dependent rect. 5 17
59 231.62 wind 9.0 30 < th dose independent rect. 9 19
80 232.69 humidity 50.0 90 > th dose dependent rect. 4 5
84 232.90 radiation 40.0 90 < th dose dependent rect. 4 7
89 232.97 humidity 60.0 270 > th dose dependent rect. 3 3
97 233.16 temperature 25.0 1440 > th dose dependent rect. 14 1
100 233.18 humidity 70.0 270 > th dose dependent rect. 4 1
109 233.32 temperature 25.0 1440 > th dose dependent rect. 14 4
131 233.59 wind 7.0 270 < th dose dependent rect. 4 2
134 233.64 precipitation 0.1 30 < th dose independent rect. 9 19
135 233.64 precipitation 0.1 30 < th dose dependent rect. 9 19
144 233.75 precipitation 0.1 270 < th dose independent rect. 3 3
145 233.75 precipitation 0.1 270 < th dose dependent rect. 3 3
150 233.79 temperature 10.0 270 > th dose dependent rect. 15 16
161 233.92 wind 7.0 270 < th dose independent rect. 15 16
163 233.99 radiation 20.0 270 < th dose dependent rect. 3 4
195 234.25 radiation 30.0 90 < th dose independent rect. 16 17
198 234.30 temperature 25.0 270 < th dose independent rect. 4 1
200 234.32 radiation 10.0 270 < th dose dependent rect. 3 7
203 234.35 humidity 50.0 270 > th dose independent rect. 6 21
243 234.80 atmosphere 1015.0 30 < th dose independent rect. 9 19
266 234.98 temperature 10.0 270 > th dose independent rect. 3 3
268 234.98 temperature 30.0 270 < th dose independent rect. 3 3
269 234.98 humidity 50.0 270 > th dose independent rect. 3 3
272 234.98 atmosphere 995.0 270 > th dose independent rect. 3 3
273 234.98 atmosphere 1015.0 270 < th dose independent rect. 3 3
277 234.98 temperature 10.0 270 > th dose independent rect. 6 21
282 235.03 wind 5.0 30 < th dose independent rect. 16 17
310 235.36 radiation 1.0 10 > th dose independent rect. 5 4
324 235.39 wind 9.0 270 < th dose independent rect. 6 21
331 235.45 precipitation 0.1 270 < th dose independent rect. 4 1
332 235.45 precipitation 0.1 270 < th dose dependent rect. 4 1
338 235.51 radiation 30.0 270 < th dose dependent rect. 2 7
362 235.66 temperature 25.0 1440 > th dose dependent rect. 13 18
407 235.87 temperature 10.0 270 > th dose independent rect. 4 1
410 235.87 humidity 50.0 270 > th dose independent rect. 4 1
413 235.87 atmosphere 995.0 270 > th dose independent rect. 4 1
414 235.87 atmosphere 1010.0 270 < th dose independent rect. 4 1
421 235.87 temperature 10.0 270 > th dose independent rect. 5 23
422 235.88 radiation 20.0 270 < th dose dependent rect. 4 1
459 236.07 radiation 30.0 90 < th dose independent rect. 4 15
476 236.22 radiation 1.0 270 < th dose dependent rect. 15 12
494 236.42 precipitation 0.1 270 < th dose independent rect. 15 16
495 236.42 precipitation 0.1 270 < th dose dependent rect. 15 16
519 236.58 atmosphere 995.0 30 > th dose dependent rect. 4 5
529 236.65 atmosphere 995.0 30 > th dose independent rect. 9 19
537 236.69 temperature 25.0 1440 > th dose dependent sin 17 NA
545 236.77 precipitation 0.1 270 < th dose independent rect. 3 16
547 236.77 precipitation 0.1 270 < th dose dependent rect. 3 16
582 237.22 humidity 70.0 270 > th dose independent rect. 18 9
599 237.33 temperature 30.0 1440 < th dose independent rect. 14 1
609 237.42 radiation 40.0 10 < th dose independent rect. 16 17
616 237.46 temperature 15.0 270 > th dose independent rect. 7 8
645 237.59 atmosphere 995.0 10 > th dose independent rect. 16 17
662 237.66 temperature 10.0 10 > th dose independent rect. 9 7
664 237.66 atmosphere 1015.0 10 < th dose independent rect. 9 7
665 237.66 precipitation 0.1 10 < th dose independent rect. 9 7
666 237.66 temperature 10.0 10 > th dose independent rect. 16 17
668 237.66 precipitation 0.1 10 < th dose dependent rect. 9 7
671 237.67 radiation 40.0 90 < th dose dependent rect. 4 15
677 237.73 wind 9.0 10 < th dose independent rect. 9 7
725 237.99 radiation 20.0 90 < th dose independent rect. 13 20
747 238.09 precipitation 0.1 10 < th dose independent rect. 16 17
749 238.09 precipitation 0.1 10 < th dose dependent rect. 16 17
766 238.23 radiation 1.0 270 < th dose independent rect. 15 12
775 238.26 precipitation 0.1 270 < th dose independent rect. 7 8
777 238.26 precipitation 0.1 270 < th dose dependent rect. 7 8
799 238.38 atmosphere 1015.0 270 < th dose independent rect. 7 8
800 238.38 temperature 10.0 270 > th dose independent rect. 15 16
812 238.45 wind 9.0 270 < th dose independent rect. 7 8
891 238.95 radiation 1.0 270 < th dose dependent rect. 6 21
897 239.00 temperature 30.0 1440 > th dose independent rect. 14 1
908 239.05 temperature 10.0 270 > th dose independent rect. 19 8
909 239.05 temperature 30.0 270 < th dose independent rect. 19 8
910 239.05 humidity 50.0 270 > th dose independent rect. 19 8
912 239.05 atmosphere 995.0 270 > th dose independent rect. 19 8
913 239.05 radiation 1.0 270 < th dose independent rect. 19 8
918 239.05 temperature 10.0 270 > th dose independent rect. 3 16
919 239.05 atmosphere 1015.0 270 < th dose independent rect. 3 16
923 239.05 radiation 1.0 270 < th dose dependent rect. 19 8
937 239.11 wind 9.0 270 < th dose independent rect. 3 16
949 239.20 radiation 40.0 90 < th dose dependent rect. 16 17
958 239.24 precipitation 0.1 270 < th dose independent rect. 6 21
959 239.24 precipitation 0.1 270 < th dose dependent rect. 6 21
962 239.26 humidity 50.0 30 > th dose independent rect. 9 19
976 239.34 radiation 1.0 90 < th dose dependent sin 11 NA
980 239.38 wind 9.0 270 < th dose independent rect. 19 8