BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0370000 Os01g0370000|AK121554
(108 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G76680.2 | chr1:28776982-28778271 FORWARD LENGTH=398 126 3e-30
AT1G76690.1 | chr1:28778976-28780355 FORWARD LENGTH=375 120 2e-28
AT2G06050.2 | chr2:2359240-2361971 REVERSE LENGTH=392 106 3e-24
AT1G09400.1 | chr1:3033676-3034993 REVERSE LENGTH=325 86 4e-18
>AT1G76680.2 | chr1:28776982-28778271 FORWARD LENGTH=398
Length = 397
Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 67/85 (78%)
Query: 19 VPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFRQKAA 78
PH L+P R+AF GTFI GG+ RE+G++AV G DLV+YGR FLANPDLP+RF+ A
Sbjct: 310 CPHTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLVAYGRWFLANPDLPKRFQVDAP 369
Query: 79 LNAYDRSTFYTPDPVVGYTDYPFLE 103
LN YDR TFYT DPVVGYTDYPFLE
Sbjct: 370 LNKYDRPTFYTSDPVVGYTDYPFLE 394
>AT1G76690.1 | chr1:28778976-28780355 FORWARD LENGTH=375
Length = 374
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 65/83 (78%)
Query: 21 HRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFRQKAALN 80
H L+P R AF GTFI GG+ RE+G++AV G DLV+YGR FLANPDLP+RF+ A LN
Sbjct: 289 HTLMPMREAFKGTFISAGGFTREDGNEAVAKGRTDLVAYGRWFLANPDLPKRFQLDAPLN 348
Query: 81 AYDRSTFYTPDPVVGYTDYPFLE 103
Y+RSTFYT DPVVGYTDYP LE
Sbjct: 349 KYNRSTFYTSDPVVGYTDYPSLE 371
>AT2G06050.2 | chr2:2359240-2361971 REVERSE LENGTH=392
Length = 391
Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 60/77 (77%)
Query: 26 FRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRLFLANPDLPERFRQKAALNAYDRS 85
R A++GTF+ +GG+++E G +AV G ADLVSYGRLF+ANPDL RF+ LN Y+R
Sbjct: 309 LRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRK 368
Query: 86 TFYTPDPVVGYTDYPFL 102
TFYT DPVVGYTDYPFL
Sbjct: 369 TFYTQDPVVGYTDYPFL 385
>AT1G09400.1 | chr1:3033676-3034993 REVERSE LENGTH=325
Length = 324
Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 52/78 (66%), Gaps = 6/78 (7%)
Query: 3 RGACVSSIEEHRARRNVPHRLLPFRRAFHGTFIVNGGYDREEGDKAVGDGYADLVSYGRL 62
R VS I E R L P R AF+GTFIV GGY RE+G+KAV +G DLV+YGRL
Sbjct: 252 RMKTVSEIFECR------ESLTPMRNAFNGTFIVAGGYTREDGNKAVAEGRTDLVAYGRL 305
Query: 63 FLANPDLPERFRQKAALN 80
FLANPDLP+RF A LN
Sbjct: 306 FLANPDLPKRFELNAPLN 323
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.141 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,671,306
Number of extensions: 107708
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 4
Length of query: 108
Length of database: 11,106,569
Length adjustment: 77
Effective length of query: 31
Effective length of database: 8,995,537
Effective search space: 278861647
Effective search space used: 278861647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)