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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0215900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oxo-phytodienoic acid reductase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.38 (0.0607) R2 : 0.859
β1 : 0.953 (0.387) R2dD : 0.0118 R2D : -0.183
β2 : 0.801 (0.106) R2dC : 0.0187 R2C : -0.28
β3 : 0.419 (0.182) R2dE : 0.0031 R2E : -0.306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10 (1.23) R2dD*E : 0.126 R2D*E : -0.141
γ1 : -4.42 (0.132) R2dN8 : 0.954 R2N8 : 0.645
σ : 0.807
deviance : 299.94
__
_____
C
peak time of C : 11.2
E
wheather : temperature
threshold : 23.77
memory length : 2496
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
293.99 0.806 7.38 0.935 0.803 0.429 1.28 -9.76 -4.39 11.2 24.17 2660 -- --
317.39 0.83 6.98 4.17 0.841 -0.83 1.64 -- -3.47 11.3 31.2 40779 -- --
299.94 0.807 7.38 0.953 0.801 0.419 -- -10 -4.42 11.2 23.77 2496 -- --
320.82 0.834 6.95 3.76 0.814 -0.676 -- -- -3.59 10.3 33.38 1036 -- --
336.93 0.855 7.36 1.24 -- 0.0563 -- -8.91 -4.33 -- 23.09 2469 -- --
341.61 0.866 7.06 3.54 0.817 -- 1.77 -- -3.75 11.6 -- -- -- --
355.1 0.882 7.05 3.62 0.81 -- -- -- -3.74 11.5 -- -- -- --
334.57 0.852 7.11 3.75 -- -0.943 -- -- -3.85 -- 33.58 1041 -- --
482.7 1.02 7.3 -- 0.847 2.37 -- -- -4.85 11.5 7.31 47520 -- --
396.25 0.93 7.07 3.59 -- -- -- -- -3.75 -- -- -- -- --
699.54 1.24 7.14 -- 0.773 -- -- -- -4.15 11.2 -- -- -- --
527.61 1.07 7.32 -- -- 2.33 -- -- -4.85 -- 5.872 47520 -- --
736.87 1.27 7.16 -- -- -- -- -- -4.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.24 temperature 25.0 720 > th dose dependent rect. 17 16
4 289.86 temperature 25.0 720 > th dose dependent sin 11 NA
5 290.46 temperature 25.0 720 > th dose dependent rect. 17 7
28 292.23 temperature 30.0 720 > th dose independent rect. 17 2
45 293.18 radiation 10.0 1440 < th dose independent rect. 16 2
50 293.75 temperature 25.0 4320 > th dose dependent rect. 16 14
51 293.78 temperature 25.0 4320 > th dose dependent rect. 16 7
66 294.10 radiation 10.0 1440 < th dose independent rect. 16 12
68 294.21 radiation 10.0 1440 < th dose independent rect. 16 9
140 295.47 humidity 70.0 1440 > th dose independent rect. 17 2
143 295.56 temperature 25.0 4320 > th dose dependent sin 12 NA
154 295.93 humidity 70.0 1440 > th dose independent rect. 17 15
182 296.15 humidity 70.0 1440 < th dose independent rect. 17 1
187 296.26 wind 5.0 43200 > th dose dependent rect. 20 13
191 296.32 temperature 30.0 90 < th dose dependent rect. 17 10
195 296.37 wind 5.0 43200 > th dose independent rect. 21 12
211 296.63 wind 5.0 43200 > th dose dependent rect. 20 9
214 296.66 humidity 70.0 1440 > th dose independent rect. 17 11
221 296.70 humidity 70.0 1440 > th dose independent rect. 17 8
232 296.75 humidity 70.0 1440 < th dose dependent rect. 16 1
241 296.81 wind 5.0 43200 < th dose independent rect. 21 12
247 296.85 temperature 30.0 720 < th dose independent rect. 17 8
263 297.12 wind 7.0 43200 < th dose independent rect. 8 1
267 297.18 wind 7.0 43200 < th dose independent rect. 20 9
269 297.21 wind 5.0 43200 > th dose independent rect. 7 2
277 297.25 radiation 10.0 1440 > th dose independent rect. 16 2
304 297.36 wind 7.0 43200 > th dose independent rect. 21 1
307 297.36 temperature 20.0 1440 > th dose dependent rect. 6 2
312 297.39 humidity 70.0 43200 < th dose independent rect. 17 13
318 297.44 wind 7.0 43200 > th dose independent rect. 20 9
319 297.45 temperature 25.0 4320 > th dose independent rect. 15 17
325 297.53 wind 7.0 43200 < th dose independent rect. 21 1
354 297.71 humidity 70.0 43200 > th dose independent rect. 18 1
383 297.86 wind 5.0 43200 > th dose dependent rect. 8 1
387 297.88 humidity 70.0 720 < th dose independent rect. 17 15
444 298.18 precipitation 0.1 43200 > th dose independent rect. 8 6
447 298.18 precipitation 0.1 43200 > th dose independent rect. 8 8
463 298.27 temperature 25.0 4320 < th dose independent rect. 4 4
468 298.32 humidity 70.0 43200 < th dose independent rect. 17 2
469 298.32 temperature 20.0 90 > th dose dependent rect. 17 14
473 298.36 precipitation 0.1 43200 < th dose independent rect. 8 8
476 298.36 precipitation 0.1 43200 < th dose dependent rect. 8 8
477 298.39 precipitation 0.1 43200 < th dose independent rect. 8 6
478 298.39 precipitation 0.1 43200 < th dose dependent rect. 8 6
488 298.45 wind 7.0 43200 > th dose dependent rect. 21 1
493 298.48 temperature 30.0 720 < th dose independent rect. 17 15
505 298.58 temperature 25.0 4320 < th dose independent rect. 15 17
510 298.60 humidity 70.0 43200 > th dose independent rect. 17 15
512 298.61 wind 5.0 43200 > th dose dependent rect. 21 6
532 298.74 humidity 70.0 1440 < th dose dependent rect. 15 3
538 298.79 humidity 70.0 43200 > th dose independent rect. 17 11
568 298.86 temperature 25.0 4320 > th dose independent rect. 4 4
571 298.88 wind 5.0 43200 > th dose independent sin 8 NA
613 299.11 temperature 25.0 4320 > th dose independent sin 12 NA
624 299.20 radiation 30.0 14400 > th dose independent rect. 7 1
678 299.35 radiation 10.0 14400 < th dose dependent rect. 8 2
724 299.51 temperature 20.0 10 > th dose dependent rect. 16 15
733 299.60 wind 5.0 43200 < th dose independent sin 8 NA
734 299.60 temperature 25.0 4320 > th dose independent sin 9 NA
736 299.60 temperature 30.0 720 < th dose independent rect. 17 10
745 299.62 precipitation 0.1 43200 > th dose independent rect. 6 11
764 299.65 wind 5.0 43200 > th dose dependent sin 9 NA
766 299.66 temperature 25.0 1440 > th dose independent rect. 6 1
781 299.72 precipitation 0.1 43200 < th dose independent rect. 6 11
782 299.72 precipitation 0.1 43200 < th dose dependent rect. 6 11
816 299.84 precipitation 0.1 43200 > th dose independent rect. 8 1
817 299.84 precipitation 0.1 43200 > th dose dependent rect. 8 1
870 300.05 temperature 30.0 10 < th dose dependent rect. 16 10
875 300.07 precipitation 0.1 43200 > th dose dependent rect. 7 9
906 300.17 humidity 70.0 1440 < th dose dependent rect. 15 17
920 300.23 temperature 30.0 10 < th dose dependent sin 14 NA
988 300.38 temperature 25.0 4320 < th dose independent sin 8 NA
998 300.41 precipitation 0.1 43200 < th dose independent rect. 8 1
999 300.41 precipitation 0.1 43200 < th dose dependent rect. 8 1