Os08g0459600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate- 10,11-reductase 3) (OPDA-reductase 3) (LeOPR3).
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Os08g0459600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate- 10,11-reductase 3) (OPDA-reductase 3) (LeOPR3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.37 | 0.212 | 12.5 | 0.939 | 0.12 | -0.581 | -0.0864 | -0.568 | 0.349 | 23.2 | 25.73 | 19 | -- | -- |
| 20.46 | 0.211 | 12.5 | 0.994 | 0.123 | -0.637 | -0.0418 | -- | 0.355 | 23.4 | 26.15 | 18 | -- | -- |
| 20.4 | 0.21 | 12.5 | 0.952 | 0.121 | -0.589 | -- | -0.474 | 0.35 | 23.2 | 25.8 | 18 | -- | -- |
| 20.46 | 0.211 | 12.5 | 0.998 | 0.123 | -0.636 | -- | -- | 0.355 | 23.4 | 26.16 | 18 | -- | -- |
| 21.1 | 0.215 | 12.5 | 0.972 | -- | -0.661 | -- | -0.377 | 0.358 | -- | 25.7 | 15 | -- | -- |
| 26.26 | 0.24 | 12.5 | 0.912 | 0.302 | -- | 0.138 | -- | 0.332 | 1.76 | -- | -- | -- | -- |
| 26.34 | 0.24 | 12.5 | 0.908 | 0.302 | -- | -- | -- | 0.332 | 1.71 | -- | -- | -- | -- |
| 21.15 | 0.215 | 12.5 | 1.01 | -- | -0.689 | -- | -- | 0.367 | -- | 25.7 | 15 | -- | -- |
| 45.63 | 0.316 | 12.5 | -- | 0.205 | -0.42 | -- | -- | 0.232 | 1.16 | 26.8 | 9 | -- | -- |
| 31.88 | 0.264 | 12.5 | 0.92 | -- | -- | -- | -- | 0.338 | -- | -- | -- | -- | -- |
| 48.08 | 0.324 | 12.5 | -- | 0.318 | -- | -- | -- | 0.23 | 1.8 | -- | -- | -- | -- |
| 47.5 | 0.322 | 12.5 | -- | -- | -0.556 | -- | -- | 0.25 | -- | 25.8 | 9 | -- | -- |
| 54.23 | 0.344 | 12.5 | -- | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.94 | temperature | 25.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 4 | 20.01 | temperature | 10.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 7 | 20.04 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 14 | 20.11 | temperature | 25.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 15 | 20.11 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 20 | 20.14 | temperature | 20.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 22 | 20.14 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 28 | 20.16 | temperature | 10.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 30 | 20.16 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 44 | 20.19 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 56 | 20.24 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 76 | 20.31 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 21 |
| 78 | 20.31 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 82 | 20.33 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 118 | 20.41 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 17 |
| 135 | 20.44 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 142 | 20.45 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 168 | 20.50 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 172 | 20.52 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 176 | 20.52 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 211 | 20.56 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 335 | 20.68 | temperature | 30.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 338 | 20.68 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 414 | 20.75 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 440 | 20.81 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 444 | 20.82 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 465 | 20.87 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 503 | 20.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 506 | 20.99 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 520 | 21.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 573 | 21.22 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 5 |
| 590 | 21.27 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 595 | 21.27 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 610 | 21.30 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 613 | 21.30 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 637 | 21.33 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 669 | 21.38 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 684 | 21.43 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 2 |
| 734 | 21.54 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 779 | 21.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 802 | 21.62 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 803 | 21.63 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 805 | 21.63 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 815 | 21.65 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 816 | 21.65 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 848 | 21.68 | temperature | 25.0 | 720 | < th | dose independent | rect. | 5 | 5 |
| 850 | 21.68 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 6 |