BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0459600 Os08g0459600|AK071203
(394 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G06050.2 | chr2:2359240-2361971 REVERSE LENGTH=392 589 e-169
AT1G76690.1 | chr1:28778976-28780355 FORWARD LENGTH=375 408 e-114
AT1G76680.2 | chr1:28776982-28778271 FORWARD LENGTH=398 393 e-110
AT1G09400.1 | chr1:3033676-3034993 REVERSE LENGTH=325 366 e-101
AT1G18020.1 | chr1:6202272-6203572 FORWARD LENGTH=270 317 8e-87
AT1G17990.1 | chr1:6192455-6193755 REVERSE LENGTH=270 317 8e-87
>AT2G06050.2 | chr2:2359240-2361971 REVERSE LENGTH=392
Length = 391
Score = 589 bits (1519), Expect = e-169, Method: Compositional matrix adjust.
Identities = 281/381 (73%), Positives = 323/381 (84%), Gaps = 3/381 (0%)
Query: 16 LFSPYQMPRFRLNHRVVLAPMTRCRAIGGVPGPALAEYYAQRTTQGGLLISEGTVVSPAG 75
LFS Y+M RF L+HRVVLAPMTRCRA+ GVP ALAEYYAQRTT GG LISEGT+VSP
Sbjct: 12 LFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGS 71
Query: 76 PGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIFFCQLWHVGRASHQVYQPNGAAPISSTDK 135
GFPHVPGIY+ EQ +AWK+VV+AVHAKGG FCQLWHVGRASH VYQPNG +PISST+K
Sbjct: 72 AGFPHVPGIYSDEQVEAWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNK 131
Query: 136 PISA-RWRILMPDGSYGKYPKPRRLAASEIPEIVEQYRQAAINAIEAGFDGIEIHGAHGY 194
PIS RWR+L+PDGS+ KYPKPR L ASEIP +VE Y +A+NAI AGFDGIEIHGAHGY
Sbjct: 132 PISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCLSALNAIRAGFDGIEIHGAHGY 191
Query: 195 IIDQFLKDGINDRTDEYGGSLSNRCRFLLEVTRAVVSAIGADRVAVRISPAIDHLDAYDS 254
+IDQFLKDGINDRTD+YGGS++NRCRFL +V VVSAIGA +V VR+SPAIDHLDA DS
Sbjct: 192 LIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDS 251
Query: 255 DPIKLGMAVVERLNALQQQSG-RLAYLHVTQPRYTAYGQTESGQHGSAEEESRLMRTLRG 313
DP+ LG+AVV LN LQ +G +LAYLHVTQPRY AYGQTESG+ GS EEE++LM++LR
Sbjct: 252 DPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRM 311
Query: 314 TYQGTFMCSGGYTRELGLEAVESGDADLVSYGRLFISNPDLVERFRLNAGLNKYVRKTFY 373
Y GTFM SGG+ +ELG++AV+ GDADLVSYGRLFI+NPDLV RF+++ LNKY RKTFY
Sbjct: 312 AYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFY 371
Query: 374 TPDPVVGYTDYPFLGQPKSRM 394
T DPVVGYTDYPFL P SR+
Sbjct: 372 TQDPVVGYTDYPFLA-PFSRL 391
>AT1G76690.1 | chr1:28778976-28780355 FORWARD LENGTH=375
Length = 374
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/376 (53%), Positives = 260/376 (69%), Gaps = 15/376 (3%)
Query: 12 KQAPLFSPYQMPRFRLNHRVVLAPMTRCRAIGGVPGPALAEYYAQRTTQGGLLISEGTVV 71
+ PL +PY+M RF L+HRVVLAP+TR ++ G VP P YY+QRT+ GG LI+E T V
Sbjct: 10 QSVPLLTPYKMGRFNLSHRVVLAPLTRQKSYGSVPQPHAILYYSQRTSPGGFLIAEATGV 69
Query: 72 SPAGPGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIFFCQLWHVGRASHQVYQPNGAAPIS 131
S G+P PGI+ +E +AWK +VDAVHAKGGIFFCQ+WHVGR S++ +QP APIS
Sbjct: 70 SDTAQGYPDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNRGFQPRRQAPIS 129
Query: 132 STDKPISARWRILMPDGSYGKYPKPRRLAASEIPEIVEQYRQAAINAIEAGFDGIEIHGA 191
T KPI + R D + ++ PRRL+ EIP IV +R AA NA+EAGFDG+EIHGA
Sbjct: 130 CTGKPIMPQMRANGIDEA--RFTPPRRLSIEEIPGIVNDFRLAARNAMEAGFDGVEIHGA 187
Query: 192 HGYIIDQFLKDGINDRTDEYGGSLSNRCRFLLEVTRAVVSAIGADRVAVRISPAIDHLDA 251
HGY+IDQF+KD +NDRTDEYGGSL NRC+F LEV AV IG DRV +R+SP D++++
Sbjct: 188 HGYLIDQFMKDKVNDRTDEYGGSLQNRCKFALEVVDAVAKEIGPDRVGIRLSPFADYMES 247
Query: 252 YDSDPIKLGMAVVERLNALQQQSGRLAYLHVTQPRYTAYGQTESGQHGSAEEESRLMRTL 311
D++P LG+ +VE LN + Y H+ +PR G+ + H + +
Sbjct: 248 GDTNPEALGLYMVESLNKYG-----ILYCHMIEPRMKTVGEIAACSH--------TLMPM 294
Query: 312 RGTYQGTFMCSGGYTRELGLEAVESGDADLVSYGRLFISNPDLVERFRLNAGLNKYVRKT 371
R ++GTF+ +GG+TRE G EAV G DLV+YGR F++NPDL +RF+L+A LNKY R T
Sbjct: 295 REAFKGTFISAGGFTREDGNEAVAKGRTDLVAYGRWFLANPDLPKRFQLDAPLNKYNRST 354
Query: 372 FYTPDPVVGYTDYPFL 387
FYT DPVVGYTDYP L
Sbjct: 355 FYTSDPVVGYTDYPSL 370
>AT1G76680.2 | chr1:28776982-28778271 FORWARD LENGTH=398
Length = 397
Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/401 (50%), Positives = 259/401 (64%), Gaps = 40/401 (9%)
Query: 12 KQAPLFSPYQMPRFRLNHRVVLAPMTRCRAIGGVPGPALAEYYAQRTTQGGLLISEGTVV 71
+ PL +PY+M RF L+HRVVLAP+TR R+ G VP P A YY+QRTT GG LI+E T V
Sbjct: 8 QSVPLLTPYKMGRFNLSHRVVLAPLTRQRSYGNVPQPHAAIYYSQRTTPGGFLITEATGV 67
Query: 72 SPAGPGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIFFCQLWHVGRASHQVYQPNGAAPIS 131
S G+ PGI+ +E +AWK +VDAVHAKGGIFFCQ+WHVGR S+ +QPNG APIS
Sbjct: 68 SDTAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNSGFQPNGKAPIS 127
Query: 132 STDKPISARWRILMPDGSYGKYPKPRRLAASEIPEIVEQYRQAAINAIE----------- 180
+DKP+ + R D + + PRRL EIP IV +R AA NA+E
Sbjct: 128 CSDKPLMPQIRSNGIDEAL--FTPPRRLGIEEIPGIVNDFRLAARNAMEAGKHILDLEFK 185
Query: 181 --------------AGFDGIEIHGAHGYIIDQFLKDGINDRTDEYGGSLSNRCRFLLEVT 226
AGFDG+EIHGA+GY+IDQF+KD +NDRTDEYGGSL NRC+F LE+
Sbjct: 186 KLKPFKILICVLVVAGFDGVEIHGANGYLIDQFMKDTVNDRTDEYGGSLQNRCKFPLEIV 245
Query: 227 RAVVSAIGADRVAVRISPAIDHLDAYDSDPIKLGMAVVERLNALQQQSGRLAYLHVTQPR 286
AV IG DRV +R+SP D++++ D++P LG+ + E LN + Y HV + R
Sbjct: 246 DAVAKEIGPDRVGIRLSPFADYMESGDTNPGALGLYMAESLNKYG-----ILYCHVIEAR 300
Query: 287 YTAYGQTESGQHGSAEEESRLMRTLRGTYQGTFMCSGGYTRELGLEAVESGDADLVSYGR 346
G+ + H + +R ++GTF+ +GG+TRE G EAV G DLV+YGR
Sbjct: 301 MKTMGEVHACPH--------TLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLVAYGR 352
Query: 347 LFISNPDLVERFRLNAGLNKYVRKTFYTPDPVVGYTDYPFL 387
F++NPDL +RF+++A LNKY R TFYT DPVVGYTDYPFL
Sbjct: 353 WFLANPDLPKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFL 393
>AT1G09400.1 | chr1:3033676-3034993 REVERSE LENGTH=325
Length = 324
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/345 (51%), Positives = 229/345 (66%), Gaps = 21/345 (6%)
Query: 22 MPRFRLNHRVVLAPMTRCRAIGGVPGPALAEYYAQRTTQGGLLISEGTVVSPAGPGFPHV 81
M F L HR+V+APM R R+ G +P P +A YY QRTT GGLLISE T VS + ++
Sbjct: 1 MKNFNLTHRIVMAPMARMRSYGNIPQPHVALYYCQRTTPGGLLISEATGVSETAMAYQNM 60
Query: 82 PGIYNQEQTDAWKKVVDAVHAKGGIFFCQLWHVGRASHQVYQPNGAAPISSTDKPISARW 141
PGI+ +EQ +AWK +VDAVH+ GGIFFCQLWH GR SHQ QPNG +P+SSTDKP +
Sbjct: 61 PGIWRKEQIEAWKPIVDAVHSHGGIFFCQLWHAGRVSHQDCQPNGESPVSSTDKPFA--- 117
Query: 142 RILMPDGSYGKYPKPRRLAASEIPEIVEQYRQAAINAIEAGFDGIEIHGAHGYIIDQFLK 201
D ++ PRRL EIP I+ +R AA NA EAGFDG+EIHGAHGY+IDQF+K
Sbjct: 118 -----DDPSNEFTPPRRLRTDEIPTIINDFRLAARNATEAGFDGVEIHGAHGYLIDQFMK 172
Query: 202 DGINDRTDEYGGSLSNRCRFLLEVTRAVVSAIGADRVAVRISPAIDHLDAYDSDPIKLGM 261
D +NDRTD YGGSL NRCRF L+V AV IG DRV +R+SP D++++ D+DP +LG+
Sbjct: 173 DSVNDRTDSYGGSLENRCRFALQVIEAVSKEIGPDRVGIRLSPFADYMESGDTDPKRLGL 232
Query: 262 AVVERLNALQQQSGRLAYLHVTQPRYTAYGQTESGQHGSAEEESRLMRTLRGTYQGTFMC 321
+ + LN + + Y H+ +PR + + + +R + GTF+
Sbjct: 233 YMAKSLNRFE-----ILYCHMIEPRMKTVSEIFECRES--------LTPMRNAFNGTFIV 279
Query: 322 SGGYTRELGLEAVESGDADLVSYGRLFISNPDLVERFRLNAGLNK 366
+GGYTRE G +AV G DLV+YGRLF++NPDL +RF LNA LNK
Sbjct: 280 AGGYTREDGNKAVAEGRTDLVAYGRLFLANPDLPKRFELNAPLNK 324
>AT1G18020.1 | chr1:6202272-6203572 FORWARD LENGTH=270
Length = 269
Score = 317 bits (811), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 152/272 (55%), Positives = 198/272 (72%), Gaps = 9/272 (3%)
Query: 12 KQAPLFSPYQMPRFRLNHRVVLAPMTRCRAIGGVPGPALAEYYAQRTTQGGLLISEGTVV 71
+ PL PY+M F L+HRVVLAP+TR R+ G +P P YY QRTT GGLLISE VV
Sbjct: 5 QSIPLLMPYKMGPFNLSHRVVLAPLTRSRSYGNIPQPNAKLYYTQRTTPGGLLISESCVV 64
Query: 72 SPAGPGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIFFCQLWHVGRASHQVYQPNGAAPIS 131
S G+P +PG++N++Q +AWK +VDAVH+KGGIFFCQ+WH GR HQ QPNG AP+S
Sbjct: 65 SETSLGYPDLPGLWNRDQVEAWKPIVDAVHSKGGIFFCQIWHGGRVFHQD-QPNGEAPVS 123
Query: 132 STDKPISARWRILMPDGSYG-KYPKPRRLAASEIPEIVEQYRQAAINAIEAGFDGIEIHG 190
STDKP LM YG ++ PRRL + E+P IV +R AA NAIEAGFDG+E+HG
Sbjct: 124 STDKP-------LMCKNMYGGQFKPPRRLRSDELPAIVNDFRIAARNAIEAGFDGVEVHG 176
Query: 191 AHGYIIDQFLKDGINDRTDEYGGSLSNRCRFLLEVTRAVVSAIGADRVAVRISPAIDHLD 250
AHGY+IDQFLKD +NDR+D+YGGSL NRCRF LEV AVV+ IG+DRV +R+SP D+++
Sbjct: 177 AHGYLIDQFLKDKVNDRSDQYGGSLENRCRFALEVIEAVVNEIGSDRVGIRLSPFADYME 236
Query: 251 AYDSDPIKLGMAVVERLNALQQQSGRLAYLHV 282
+ DS+P LG+ +V+ +N +S + +L++
Sbjct: 237 SGDSNPEALGLYLVQAMNKHGMESSTVTWLNL 268
>AT1G17990.1 | chr1:6192455-6193755 REVERSE LENGTH=270
Length = 269
Score = 317 bits (811), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 152/272 (55%), Positives = 198/272 (72%), Gaps = 9/272 (3%)
Query: 12 KQAPLFSPYQMPRFRLNHRVVLAPMTRCRAIGGVPGPALAEYYAQRTTQGGLLISEGTVV 71
+ PL PY+M F L+HRVVLAP+TR R+ G +P P YY QRTT GGLLISE VV
Sbjct: 5 QSIPLLMPYKMGPFNLSHRVVLAPLTRSRSYGNIPQPNAKLYYTQRTTPGGLLISESCVV 64
Query: 72 SPAGPGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIFFCQLWHVGRASHQVYQPNGAAPIS 131
S G+P +PG++N++Q +AWK +VDAVH+KGGIFFCQ+WH GR HQ QPNG AP+S
Sbjct: 65 SETSLGYPDLPGLWNRDQVEAWKPIVDAVHSKGGIFFCQIWHGGRVFHQD-QPNGEAPVS 123
Query: 132 STDKPISARWRILMPDGSYG-KYPKPRRLAASEIPEIVEQYRQAAINAIEAGFDGIEIHG 190
STDKP LM YG ++ PRRL + E+P IV +R AA NAIEAGFDG+E+HG
Sbjct: 124 STDKP-------LMCKNMYGGQFKPPRRLRSDELPAIVNDFRIAARNAIEAGFDGVEVHG 176
Query: 191 AHGYIIDQFLKDGINDRTDEYGGSLSNRCRFLLEVTRAVVSAIGADRVAVRISPAIDHLD 250
AHGY+IDQFLKD +NDR+D+YGGSL NRCRF LEV AVV+ IG+DRV +R+SP D+++
Sbjct: 177 AHGYLIDQFLKDKVNDRSDQYGGSLENRCRFALEVIEAVVNEIGSDRVGIRLSPFADYME 236
Query: 251 AYDSDPIKLGMAVVERLNALQQQSGRLAYLHV 282
+ DS+P LG+ +V+ +N +S + +L++
Sbjct: 237 SGDSNPEALGLYLVQAMNKHGMESSTVTWLNL 268
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,665,409
Number of extensions: 372079
Number of successful extensions: 737
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 6
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)