BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0368700 Os01g0368700|AK067396
(215 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0368700 Protein of unknown function DUF679 family protein 403 e-113
Os01g0388700 Protein of unknown function DUF679 family protein 216 7e-57
Os07g0407900 Protein of unknown function DUF679 family protein 152 2e-37
Os01g0389200 Protein of unknown function DUF679 family protein 147 7e-36
Os01g0389700 Protein of unknown function DUF679 family protein 143 8e-35
Os01g0368400 137 5e-33
Os01g0378600 122 2e-28
Os01g0378200 122 2e-28
Os03g0370400 Protein of unknown function DUF679 family protein 108 2e-24
Os08g0106501 Protein of unknown function DUF679 family protein 102 3e-22
Os07g0645300 Protein of unknown function DUF679 family protein 85 4e-17
Os06g0352200 Protein of unknown function DUF679 family protein 77 8e-15
Os01g0882400 Protein of unknown function DUF679 family protein 73 2e-13
Os02g0479000 69 2e-12
>Os01g0368700 Protein of unknown function DUF679 family protein
Length = 215
Score = 403 bits (1035), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/215 (93%), Positives = 200/215 (93%)
Query: 1 MIGGAARPPTPPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTA 60
MIGGAARPPTPPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTA
Sbjct: 1 MIGGAARPPTPPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTA 60
Query: 61 ALIAACTASCVLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFEGTREEMEERFGDLPGM 120
ALIAACTASCVLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFEGTREEMEERFGDLPGM
Sbjct: 61 ALIAACTASCVLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFEGTREEMEERFGDLPGM 120
Query: 121 KVRALDXXXXXXXXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMI 180
KVRALD LGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMI
Sbjct: 121 KVRALDFVHAHVSAVVFVVVALGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMI 180
Query: 181 FPTTRKSIGYTDMMPHKEDYGKGGNNIPGQTTPSV 215
FPTTRKSIGYTDMMPHKEDYGKGGNNIPGQTTPSV
Sbjct: 181 FPTTRKSIGYTDMMPHKEDYGKGGNNIPGQTTPSV 215
>Os01g0388700 Protein of unknown function DUF679 family protein
Length = 225
Score = 216 bits (551), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 114/190 (60%), Positives = 129/190 (67%), Gaps = 4/190 (2%)
Query: 9 PTPPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTA 68
PTP VDKT+ A D+LKLLPTGTVLAF LAPSF+NHG A+RY ALI AC A
Sbjct: 40 PTP--AVDKTLSGASDLLKLLPTGTVLAFQALAPSFSNHGVCHAVANRYLVLALIGACAA 97
Query: 69 SCVLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFEGTREEMEERFGDLPGMKVRALDXX 128
SC+LLSFTDSL+ H DG+ LYYGVATLRGFRPFNF GTREE F DL ++ ALD
Sbjct: 98 SCMLLSFTDSLIGH-DGK-LYYGVATLRGFRPFNFAGTREEHGTVFKDLSRFRITALDFV 155
Query: 129 XXXXXXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMIFPTTRKSI 188
+A VQ CLFP+A E+ NLP+G G L+SMVFMIFPTTRKSI
Sbjct: 156 HAFFSAVVFLAVAFADAAVQTCLFPEAEADMRELLVNLPLGAGFLSSMVFMIFPTTRKSI 215
Query: 189 GYTDMMPHKE 198
GYTDM PH +
Sbjct: 216 GYTDMTPHSQ 225
>Os07g0407900 Protein of unknown function DUF679 family protein
Length = 262
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 109/185 (58%), Gaps = 12/185 (6%)
Query: 15 VDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTASCVLLS 74
+DKT+ + ++ KLLPTGTVLAF L+PSFTN G AC ++RY TAAL+ C SC+ S
Sbjct: 75 MDKTLSSVANLAKLLPTGTVLAFQSLSPSFTNRG-ACLTSNRYLTAALLYLCVLSCIFFS 133
Query: 75 FTDSLVSHVDGRRLYYGVATLRGFRPFNFEGT---------REEMEERFGDLPGMKVRAL 125
FTDS V DG+ LYYGVAT +GF FN++ + E F DL +++R +
Sbjct: 134 FTDSFVGG-DGK-LYYGVATAKGFLVFNYDAGSSSDGDDDDQRRRREVFKDLRRLRIRWV 191
Query: 126 DXXXXXXXXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMIFPTTR 185
D + VQ C FP+AG ++ NLP+G G L++ VF++FPTTR
Sbjct: 192 DYVHAVFTALVFMTVAFSSTAVQSCYFPEAGDNVKQLLTNLPLGAGFLSTTVFLVFPTTR 251
Query: 186 KSIGY 190
K IGY
Sbjct: 252 KGIGY 256
>Os01g0389200 Protein of unknown function DUF679 family protein
Length = 264
Score = 147 bits (370), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 105/184 (57%), Gaps = 4/184 (2%)
Query: 14 VVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTASCVLL 73
+ DK M + ++ +LLPTGT LA+ L+ SFTNHG C ++R+ TA L+A TAS +
Sbjct: 68 MTDKVMASTANLAQLLPTGTALAYQALSTSFTNHG-QCYRSNRWLTAGLVAVLTASSIFF 126
Query: 74 SFTDSLVSHVDGRRLYYGVATLRGFRPFNFEGTREEMEE-RFGDLPGMKVRALDXXXXXX 132
S TDS+V G +LYYG+AT RGF FN EE +E L ++VR LD
Sbjct: 127 SLTDSVVGR--GGKLYYGMATPRGFNVFNLSREEEEAQELSRTKLRELRVRPLDIVHAFF 184
Query: 133 XXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMIFPTTRKSIGYTD 192
+ + C FPDAG E+ +NLP+G+ +++ VF++FPT RK IGYTD
Sbjct: 185 TAVVFLTVAFSDVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKRKGIGYTD 244
Query: 193 MMPH 196
P
Sbjct: 245 TTPR 248
>Os01g0389700 Protein of unknown function DUF679 family protein
Length = 240
Score = 143 bits (361), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 109/193 (56%), Gaps = 8/193 (4%)
Query: 14 VVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTASCVLL 73
V DK M + ++ +LLPTGTVLA+ L+PSFTNHG C AA+++ TA L+ +
Sbjct: 53 VTDKVMASTANLAQLLPTGTVLAYQALSPSFTNHG-ECNAANKWLTAVLVGVLAGLSLFF 111
Query: 74 SFTDSLVSHVDGRRLYYGVATLRGFRPFNFEGTREEMEERFGDLPGMKVRALDXXXXXXX 133
SFTDS+V DG+ LYYGVAT RG FN +REE E + +++R LD
Sbjct: 112 SFTDSVVGQ-DGK-LYYGVATRRGLNVFNM--SREEEEAKKLSHSELRLRPLDFVHSFFT 167
Query: 134 XXXXXXXXLGNADVQGCLF-PDAGTGFTEMFRNLPMGLGLLASMVFMIFPTTRKSIGYTD 192
+ +Q C F + G E+ +NLP+G+ L+S VF+IFPT RK IGY D
Sbjct: 168 AMVFLTVAFSDVGLQNCFFGQNPGGNTKELLKNLPLGMAFLSSFVFLIFPTKRKGIGYND 227
Query: 193 MMPHK--EDYGKG 203
P++ ED K
Sbjct: 228 NTPNRKAEDVTKN 240
>Os01g0368400
Length = 335
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 104/192 (54%), Gaps = 19/192 (9%)
Query: 15 VDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTASCVLLS 74
VDKT+ +++KLLPTGT LAF LAPSFTNHG C A +RY + LIA C A C LLS
Sbjct: 50 VDKTLSTTANLVKLLPTGTTLAFQALAPSFTNHG-RCLAINRYISGGLIAFCCAICALLS 108
Query: 75 FTDSLVSHVDGRRLYYGVA-------TLRGFRPFNFEGTRE---------EMEERFGDLP 118
FTDS++ R YYG+A GF PFN+E R ++ +L
Sbjct: 109 FTDSIIDRKG--RPYYGLAFPADEDTGKGGFVPFNYEKPRRPSNGAATAAADDDDSWELY 166
Query: 119 GMKVRALDXXXXXXXXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVF 178
+VR LD +A +Q CLFP + E N+P+G+G +AS VF
Sbjct: 167 KRRVRPLDFLHATLRVFVFLALAFSDAGIQTCLFPQESATWREALVNMPLGVGFVASFVF 226
Query: 179 MIFPTTRKSIGY 190
MIFP+TRK +GY
Sbjct: 227 MIFPSTRKGVGY 238
>Os01g0378600
Length = 565
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 99/202 (49%), Gaps = 24/202 (11%)
Query: 11 PPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTASC 70
P A D + A+ ++ +LLPTG+V+A+ L+ SF NHG C ++ + T +L+ T C
Sbjct: 53 PAAAQDNVLSASANLAQLLPTGSVMAYQALSSSFNNHG-ECYTSNWWLTVSLVTFLTVFC 111
Query: 71 VLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFE--------------------GTREEM 110
+ +FTDS ++H ++YYGVA R FN E +E
Sbjct: 112 IFFAFTDS-ITH--KGKVYYGVAMSERLRIFNIEVGDSIADEEGKLIIMPEQGKDLTQEQ 168
Query: 111 EERFGDLPGMKVRALDXXXXXXXXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGL 170
E L K+ LD + +Q CLFP AG E+ +N+P+G+
Sbjct: 169 REVLNQLKKRKLHWLDGVHAFFTAVVFLSVAFSDVGLQKCLFPHAGHDTMELLKNMPLGM 228
Query: 171 GLLASMVFMIFPTTRKSIGYTD 192
L+S VFMIFPTTR IG++D
Sbjct: 229 SFLSSFVFMIFPTTRHGIGFSD 250
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 3 GGAARPPTPPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAAL 62
G + PA DK + A+ ++ +LLPTG+V+A+ L+PSF NH G C ++ + T +L
Sbjct: 295 GNEENANSKPAAQDKVLSASANLAQLLPTGSVMAYQALSPSFNNH-GECYTSNWWLTVSL 353
Query: 63 IAACTASCVLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFE 104
+ T C+ + TD++ + +G ++YYGVA G + FN E
Sbjct: 354 VTFLTVFCIFFAITDTI--YYNG-KVYYGVAMRGGLKIFNKE 392
>Os01g0378200
Length = 565
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 99/202 (49%), Gaps = 24/202 (11%)
Query: 11 PPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTASC 70
P A D + A+ ++ +LLPTG+V+A+ L+ SF NHG C ++ + T +L+ T C
Sbjct: 53 PAAAQDNVLSASANLAQLLPTGSVMAYQALSSSFNNHG-ECYTSNWWLTVSLVTFLTVFC 111
Query: 71 VLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFE--------------------GTREEM 110
+ +FTDS ++H ++YYGVA R FN E +E
Sbjct: 112 IFFAFTDS-ITH--KGKVYYGVAMSERLRIFNIEVGDSIADEEGKLIIMPEQGKDLTQEQ 168
Query: 111 EERFGDLPGMKVRALDXXXXXXXXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGL 170
E L K+ LD + +Q CLFP AG E+ +N+P+G+
Sbjct: 169 REVLNQLKKRKLHWLDGVHAFFTAVVFLSVAFSDVGLQKCLFPHAGHDTMELLKNMPLGM 228
Query: 171 GLLASMVFMIFPTTRKSIGYTD 192
L+S VFMIFPTTR IG++D
Sbjct: 229 SFLSSFVFMIFPTTRHGIGFSD 250
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 3 GGAARPPTPPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAAL 62
G + PA DK + A+ ++ +LLPTG+V+A+ L+PSF NH G C ++ + T +L
Sbjct: 295 GNEENANSKPAAQDKVLSASANLAQLLPTGSVMAYQALSPSFNNH-GECYTSNWWLTVSL 353
Query: 63 IAACTASCVLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFE 104
+ T C+ + TD++ + +G ++YYGVA G + FN E
Sbjct: 354 VTFLTVFCIFFAITDTI--YYNG-KVYYGVAMRGGLKIFNKE 392
>Os03g0370400 Protein of unknown function DUF679 family protein
Length = 193
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 5 AARPPTPPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIA 64
AA P +V D+ + D++KLLP+GTV F L+P TN+G A SR +AAL+A
Sbjct: 2 AAPPARSVSVADRALRGVADLIKLLPSGTVFLFQFLSPLVTNNGHCAAAYSRVLSAALLA 61
Query: 65 ACTASCVLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFEGTREEMEERFGDLPGMKVRA 124
C A C SFTDS V DG R+YYGV T RG R F + + L G ++RA
Sbjct: 62 LCGAFCAFSSFTDSYVGS-DG-RVYYGVVTARGLRTFAADPDAAARD-----LSGYRLRA 114
Query: 125 LDXXXXXXXXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMIFPTT 184
D L +AD CL+P M LP +G +AS FM+FP
Sbjct: 115 GDFVHAALSLLVFATIALLDADTVACLYPALEVSERTMMAVLPPVVGGVASYAFMVFPNN 174
Query: 185 RKSIGY-----TDMMPHKE 198
R IGY T+ HK
Sbjct: 175 RHGIGYQPTRATEDFEHKH 193
>Os08g0106501 Protein of unknown function DUF679 family protein
Length = 224
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 6/186 (3%)
Query: 7 RPPTP--PAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIA 64
RPP P+++ + + + + LLPTGTV+AF LAP+FTN+G AC A + TAAL+A
Sbjct: 33 RPPAARRPSLLSQALASTASLANLLPTGTVMAFQLLAPTFTNNG-ACDATTSLLTAALLA 91
Query: 65 ACTASCVLLSFTDSLVSHVDGRRLYYGVATLRGFRPFNFEGTREEMEERFGDLPGMKVRA 124
SCVL SFTDS V DGR +YYG+AT RG ++ + D ++RA
Sbjct: 92 LLALSCVLASFTDS-VRGPDGR-VYYGLATPRGLWLLDYPPAGAGAPPQ-PDTSRYRMRA 148
Query: 125 LDXXXXXXXXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMIFPTT 184
+D + +V GC +P G E+ +P+G+G++ S++F++FPTT
Sbjct: 149 IDGVHALLSVGVFGVVAARDKNVVGCFWPSPAKGTEEVLGIVPLGVGVMCSLLFVVFPTT 208
Query: 185 RKSIGY 190
R IGY
Sbjct: 209 RHGIGY 214
>Os07g0645300 Protein of unknown function DUF679 family protein
Length = 188
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 4/181 (2%)
Query: 16 DKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTASCVLLSF 75
D T + D+LKLLPT TV+ + L P TN G C A++ T ++ C C F
Sbjct: 3 DTTFKSIGDVLKLLPTATVIVYEVLTPIVTNTGD-CHVANKVVTPVILVLCAFFCAFSQF 61
Query: 76 TDSLVSHVDGRRLYYGVATLRGFRPFNFEGTREEMEERFGDLPGMKVRALD-XXXXXXXX 134
TDS V DG+ + YG+ T RG PF+ G + + D ++R D
Sbjct: 62 TDSYVG-ADGK-VRYGLVTARGLLPFSGGGGADGGDAAGRDFSKYRLRFGDFVHAFFSVA 119
Query: 135 XXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMIFPTTRKSIGYTDMM 194
L +A+ C +P ++ LP+ +G LAS+VF++FP+TR IGY
Sbjct: 120 VFAAVALLADANTVSCFYPSLKDQQKKVVMALPVVVGALASVVFVVFPSTRHGIGYPPAK 179
Query: 195 P 195
P
Sbjct: 180 P 180
>Os06g0352200 Protein of unknown function DUF679 family protein
Length = 253
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 10/177 (5%)
Query: 15 VDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTASCVLLS 74
+ + + ++ K LPTG VL F L+P FTN GG C +R TA L+ C A+C L
Sbjct: 81 ITRAFRSTAELAKHLPTGAVLVFEVLSPVFTN-GGKCQDVNRVMTAWLVGLCAAACFFLC 139
Query: 75 FTDSLVSHVDGR-RLYYGVATLRGFRPFNFEGTREEMEERFGDLPGMKVRALDXXXXXXX 133
FTDS H DG+ + Y VAT G + +GT + ++R +D
Sbjct: 140 FTDSF--H-DGKGTVRYVVATRAGL--WVIDGTAPPPPDVAAT---YRLRFIDFFHAVLS 191
Query: 134 XXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMIFPTTRKSIGY 190
+ + +V C +P ++ ++P+ GL+ +M+F FP+TR IG+
Sbjct: 192 LIVFLSVAMFDHNVGACFYPVMSYDTRQVLTDVPLAGGLVGTMLFATFPSTRHGIGF 248
>Os01g0882400 Protein of unknown function DUF679 family protein
Length = 227
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 25/174 (14%)
Query: 28 LLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALIAACTASCVLLSFTDSLVSHVDGRR 87
LLPT T+LAF AP T+ G C +R T AL+ C ASCV + TDS S R
Sbjct: 55 LLPTATILAFAIFAPLLTD-DGKCTRLNRALTGALMLLCAASCVFFTLTDSFRSPTG--R 111
Query: 88 LYYGVATLRGFRPFNF-----------EGTREEMEERFGDLPGMKVRALDXXXXXXXXXX 136
L YG+AT G R F G RE ER+ ++R D
Sbjct: 112 LRYGIATTSGIRTFCVGGRRRRRGGGKAGPRE--PERY------RLRWSDLFHTALALVA 163
Query: 137 XXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMIFPTTRKSIGY 190
+ D+ C +P ++ +P+ +G + S++F++FP+ R+ IGY
Sbjct: 164 FVTFAASHHDIVLCYYPGVP---RKVVNTVPLVIGFVVSLLFVLFPSKRRGIGY 214
>Os02g0479000
Length = 216
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 4/188 (2%)
Query: 4 GAARPPTPPAVVDKTMCAACDILKLLPTGTVLAFHELAPSFTNHGGACGAASRYTTAALI 63
G T ++V K + + D+ K LPTG VLAF L+PSFT G+C AA+R TA L+
Sbjct: 26 GQTTQATQASLVCKALNSTADLAKHLPTGAVLAFEVLSPSFTAD-GSCTAANRALTACLV 84
Query: 64 AACTASCVLLSFTDSLVSHVDGRRLYYGVATLRG-FRPFNFEGTREEMEERFGDLPGMKV 122
AC C LL FTDS R YG T G R + ++
Sbjct: 85 GACALCCFLLCFTDSYRDATGSVR--YGFVTPSGSLRLIDSGSGSGSPPPPPPRDDRYRL 142
Query: 123 RALDXXXXXXXXXXXXXXXLGNADVQGCLFPDAGTGFTEMFRNLPMGLGLLASMVFMIFP 182
A D + + +V C +P ++ +PM G S +F +FP
Sbjct: 143 GARDVLHGALSFAVFLAVAMVDRNVVACFYPVESPATRQLLAAVPMAAGAAGSFLFAMFP 202
Query: 183 TTRKSIGY 190
+TR+ IG+
Sbjct: 203 STRRGIGF 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,031,076
Number of extensions: 315273
Number of successful extensions: 834
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 16
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)