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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0352200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF679 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0351) R2 : 0.138
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.02 (0.503) R2dE : 0.121 R2E : 0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.199 (0.074) R2dN8 : 0.0176 R2N8 : 0.0174
σ : 0.66
deviance : 200.6
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.05
memory length : 39
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.9
open length of G : 3.48

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.64 0.652 3.06 0.136 0.0718 4.06 0.454 -12.4 -0.18 13.8 88.86 54 13.1 2.45
199.35 0.658 3.04 0.129 0.0574 3.85 0.327 -- -0.229 12.5 90 39 13.9 2.04
193.42 0.648 3.06 0.15 0.0706 4.09 -- -12.3 -0.177 13.6 88.85 54 13 2.48
199.44 0.658 3.05 0.193 0.0425 3.99 -- -- -0.188 12 90 39 13.9 1.83
193.72 0.648 3.06 0.146 -- 4.13 -- -12.2 -0.178 -- 88.87 53 13 2.5
226.1 0.705 3.05 0.199 0.127 -- 0.356 -- -0.203 13.9 -- -- -- --
226.58 0.705 3.05 0.21 0.129 -- -- -- -0.2 14.3 -- -- -- --
199.61 0.658 3.05 0.193 -- 4.01 -- -- -0.188 -- 90 39 13.9 1.84
200.44 0.659 3.05 -- 0.0532 3.99 -- -- -0.197 12.5 90.02 39 13.9 3.5
227.57 0.705 3.05 0.204 -- -- -- -- -0.204 -- -- -- -- --
227.74 0.706 3.05 -- 0.125 -- -- -- -0.224 14.3 -- -- -- --
200.6 0.66 3.05 -- -- 4.02 -- -- -0.199 -- 90.05 39 13.9 3.48
228.67 0.706 3.05 -- -- -- -- -- -0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.92 wind 1 270 < th dose dependent rect. 12 1
2 196.32 humidity 90 90 > th dose independent rect. 13 2
4 197.63 wind 7 90 > th dose independent rect. 7 2
8 197.67 wind 7 90 > th dose dependent rect. 7 2
14 197.77 wind 7 90 > th dose independent rect. 1 8
15 197.77 wind 7 90 > th dose dependent rect. 1 8
20 199.47 humidity 90 30 > th dose dependent rect. 13 3
32 199.53 humidity 90 30 > th dose dependent rect. 13 1
56 200.12 wind 1 270 < th dose independent rect. 12 1
106 209.98 radiation 10 270 < th dose independent rect. 11 2
110 210.61 wind 1 270 < th dose independent rect. 11 4
129 211.43 radiation 10 10 < th dose dependent rect. 14 1
153 213.24 radiation 20 270 > th dose independent rect. 6 1
168 213.41 wind 1 30 < th dose independent rect. 15 1
170 213.41 wind 1 30 < th dose dependent rect. 15 1
173 213.48 radiation 10 90 < th dose dependent rect. 11 4
174 213.59 radiation 20 270 > th dose dependent rect. 6 1
206 214.50 wind 1 270 < th dose dependent rect. 11 9
226 215.33 temperature 25 10 < th dose dependent rect. 9 1
244 215.86 humidity 70 90 < th dose dependent rect. 7 2
282 216.40 radiation 40 90 > th dose dependent rect. 8 1
299 216.43 wind 3 10 < th dose dependent rect. 12 4
330 217.00 wind 9 90 > th dose independent rect. 22 12
332 217.02 wind 9 90 > th dose dependent rect. 22 12
333 217.04 wind 9 720 > th dose independent rect. 22 4
341 217.04 wind 9 720 > th dose dependent rect. 22 4
350 217.07 wind 9 720 > th dose independent rect. 22 1
354 217.07 wind 9 720 > th dose dependent rect. 22 1
439 217.25 radiation 10 10 > th dose dependent rect. 17 14
443 217.27 humidity 50 10 < th dose dependent rect. 15 3
461 217.28 radiation 10 10 < th dose independent rect. 13 3
516 217.61 radiation 10 10 < th dose independent rect. 14 1
525 217.68 humidity 50 10 < th dose independent rect. 15 3
549 217.74 humidity 50 90 < th dose independent rect. 15 2
639 218.14 humidity 50 30 < th dose dependent sin 12 NA
644 218.17 wind 1 270 < th dose independent rect. 11 9
759 218.59 humidity 50 30 < th dose independent sin 11 NA
762 218.60 wind 3 10 < th dose independent rect. 12 5
832 218.91 radiation 10 10 > th dose dependent rect. 17 1
856 218.98 humidity 50 30 > th dose independent sin 11 NA
871 219.05 wind 3 10 < th dose dependent rect. 12 11
880 219.11 wind 1 30 < th dose dependent rect. 15 8
895 219.17 atmosphere 1005 30 < th dose independent rect. 14 3
942 219.52 wind 1 30 < th dose independent rect. 15 8
971 219.61 humidity 70 90 < th dose independent rect. 8 2
1000 219.72 humidity 70 90 < th dose independent rect. 6 3