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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0407900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF679 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0317) R2 : 0.29
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.45 (0.327) R2dE : 0.291 R2E : 0.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0236 (0.067) R2dN8 : 0.000522 R2N8 : -0.000922
σ : 0.595
deviance : 163.32
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C
peak time of C : --
E
wheather : temperature
threshold : 23.21
memory length : 339
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.4
open length of G : 5.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.5 0.555 2.88 -0.283 0.223 1.87 -0.653 -5.39 0.138 0.548 28.48 383 9.41 5.72
151.76 0.574 2.93 -0.588 0.0607 3.06 -1.48 -- 0.0371 17.1 25.12 362 10 4.7
140.49 0.552 2.89 -0.313 0.214 1.94 -- -4.78 0.135 0.587 28.51 393 9.46 5.6
156.34 0.582 2.96 -0.57 0.0486 3.56 -- -- -0.0275 23 23.96 365 9.92 5.67
142.52 0.556 2.89 -0.356 -- 1.78 -- -5.07 0.097 -- 28.1 378 9.71 5.52
190.66 0.647 2.97 -0.881 0.225 -- -2.27 -- -0.127 16.1 -- -- -- --
205.32 0.671 2.98 -0.908 0.211 -- -- -- -0.14 15.8 -- -- -- --
156.05 0.582 2.95 -0.552 -- 3.89 -- -- -0.0179 -- 23.48 351 10.2 5.77
164.04 0.597 2.94 -- 0.0526 4.12 -- -- 0.0107 23 23.63 362 9.98 5.88
207.77 0.674 2.98 -0.917 -- -- -- -- -0.146 -- -- -- -- --
227.05 0.705 2.95 -- 0.229 -- -- -- -0.0389 15.8 -- -- -- --
163.32 0.595 2.94 -- -- 4.45 -- -- 0.0236 -- 23.21 339 10.4 5.6
229.94 0.708 2.95 -- -- -- -- -- -0.0439 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.62 temperature 30 270 < th dose dependent rect. 10 6
2 144.81 temperature 30 270 < th dose dependent rect. 9 8
6 147.31 temperature 30 720 < th dose dependent rect. 4 9
10 148.24 temperature 15 720 > th dose dependent rect. 5 8
29 150.03 temperature 20 90 < th dose independent rect. 11 5
58 151.23 temperature 20 30 < th dose dependent rect. 10 7
103 152.48 temperature 20 10 < th dose independent rect. 11 6
118 152.81 temperature 30 720 < th dose dependent rect. 9 2
119 152.83 temperature 20 270 < th dose dependent rect. 12 1
125 152.91 temperature 30 10 < th dose dependent rect. 10 7
168 153.62 temperature 15 270 > th dose dependent rect. 5 15
175 153.72 temperature 20 270 < th dose independent rect. 12 1
193 153.94 temperature 15 720 > th dose dependent sin 3 NA
205 154.22 temperature 30 720 < th dose dependent sin 3 NA
230 154.71 temperature 20 720 < th dose independent rect. 4 8
367 156.54 temperature 20 720 > th dose independent rect. 4 9
494 157.97 temperature 30 30 < th dose dependent sin 21 NA
539 158.29 temperature 15 30 > th dose dependent sin 21 NA
646 159.10 temperature 20 270 > th dose dependent sin 23 NA
659 159.17 temperature 20 10 < th dose independent rect. 10 10
872 160.43 temperature 15 720 < th dose independent rect. 4 1
903 160.50 temperature 30 10 < th dose dependent rect. 24 16
916 160.60 atmosphere 1010 720 > th dose independent rect. 9 3