BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0407900 Os07g0407900|AK108877
(262 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02430.1 | chr3:499360-500019 FORWARD LENGTH=220 147 7e-36
AT5G46090.1 | chr5:18693485-18694129 FORWARD LENGTH=215 136 9e-33
AT4G24310.1 | chr4:12600900-12601541 FORWARD LENGTH=214 134 4e-32
AT4G18425.1 | chr4:10181421-10182062 REVERSE LENGTH=214 129 2e-30
AT1G09157.1 | chr1:2951665-2952396 REVERSE LENGTH=244 127 6e-30
AT5G39650.1 | chr5:15875265-15875999 FORWARD LENGTH=245 127 8e-30
AT3G21550.1 | chr3:7591708-7592262 REVERSE LENGTH=185 125 3e-29
AT3G21520.1 | chr3:7582000-7582623 FORWARD LENGTH=208 120 6e-28
AT5G27370.1 | chr5:9667311-9667886 FORWARD LENGTH=192 119 2e-27
AT4G28485.1 | chr4:14075321-14076011 REVERSE LENGTH=166 59 3e-09
>AT3G02430.1 | chr3:499360-500019 FORWARD LENGTH=220
Length = 219
Score = 147 bits (370), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 111/215 (51%), Gaps = 19/215 (8%)
Query: 49 GSTTPTP-------QRPVKAGXXXXXXXXXTTAMDKTLSSVANLAKLLPTGTVLAFQSLS 101
+ TP P Q P ++ AM TL+S ANL+ LLPTGT+LAFQ L+
Sbjct: 8 NANTPAPELDELSDQTPSESRVLKRQMSMSQRAMSNTLTSAANLSNLLPTGTLLAFQLLT 67
Query: 102 PSFTNRGACLTSNRYLTAALLYLCVLSCIFFSFTDSFVGGDGKLYYGVATAKGFLVFNYX 161
P FT+ G C + R+LTA LL+L SC SFTDS DG +Y+G T KG V +Y
Sbjct: 68 PVFTSNGVCDHATRFLTAVLLFLLAASCFVSSFTDSVKADDGTIYFGFVTFKGMWVVDYP 127
Query: 162 XXXXXXXXXXXQRRRREVFKDLRRLRIRWVDYVHAVFTALVFMTVAFSSTAVQSCYFPEA 221
DL + R+R+VD++HA + LVF VA + C++P
Sbjct: 128 DPSGLG------------LPDLAKYRMRFVDWIHATLSVLVFGAVALRDKYITDCFYPSP 175
Query: 222 GDNVKQLLTNLPLGAGFLSTTVFLVFPTTRKGIGY 256
K +L +P+G G + + +F+VFP R GIGY
Sbjct: 176 EAETKHVLDIVPVGVGVMCSLLFMVFPARRHGIGY 210
>AT5G46090.1 | chr5:18693485-18694129 FORWARD LENGTH=215
Length = 214
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 102/183 (55%), Gaps = 14/183 (7%)
Query: 74 AMDKTLSSVANLAKLLPTGTVLAFQSLSPSFTNRGACLTSNRYLTAALLYLCVLSCIFFS 133
A+ KT + ANLA LLPTGTVLAFQ LSP TN G C ++R++TA L+ +C SC S
Sbjct: 41 AIGKTFQTTANLANLLPTGTVLAFQILSPICTNVGRCDLTSRFMTALLVSICGFSCFILS 100
Query: 134 FTDSFVGGDGKLYYGVATAKGFLVFNYXXXXXXXXXXXXQRRRREVFKDLRRLRIRWVDY 193
FTDS+ +G + YG AT GF + + + ++R++D+
Sbjct: 101 FTDSYKDLNGSVCYGFATIHGFWIIDGSATLPQELS--------------KSYKLRFIDF 146
Query: 194 VHAVFTALVFMTVAFSSTAVQSCYFPEAGDNVKQLLTNLPLGAGFLSTTVFLVFPTTRKG 253
VHA+ + LVF V V +C++PE V +LLT LP+ G + VF FPTTR G
Sbjct: 147 VHAIMSFLVFGAVVLFDQNVVNCFYPEPSAEVVELLTTLPVAVGVFCSMVFAKFPTTRHG 206
Query: 254 IGY 256
IG+
Sbjct: 207 IGF 209
>AT4G24310.1 | chr4:12600900-12601541 FORWARD LENGTH=214
Length = 213
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 101/182 (55%), Gaps = 12/182 (6%)
Query: 75 MDKTLSSVANLAKLLPTGTVLAFQSLSPSFTNRGACLTSNRYLTAALLYLCVLSCIFFSF 134
M +TL+S ANLA LLPTGT+LAF L P FT+ G+C + LT LL L +SC SF
Sbjct: 35 MSQTLTSAANLANLLPTGTLLAFTLLIPVFTSNGSCDYPTQVLTIVLLTLLSISCFLSSF 94
Query: 135 TDSFVGGDGKLYYGVATAKGFLVFNYXXXXXXXXXXXXQRRRREVFKDLRRLRIRWVDYV 194
TDS DG +YYG AT KG VF+Y +L + RIR +D++
Sbjct: 95 TDSVKAEDGNVYYGFATRKGMWVFDYPDPDGLG------------LPNLSKYRIRIIDWI 142
Query: 195 HAVFTALVFMTVAFSSTAVQSCYFPEAGDNVKQLLTNLPLGAGFLSTTVFLVFPTTRKGI 254
HAV + LVF VA SC++P K++L +P+G G + +FLVFP R GI
Sbjct: 143 HAVLSVLVFGAVALRDKNAVSCFYPAPEQETKKVLDIVPMGVGVICGMLFLVFPARRHGI 202
Query: 255 GY 256
GY
Sbjct: 203 GY 204
>AT4G18425.1 | chr4:10181421-10182062 REVERSE LENGTH=214
Length = 213
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 100/183 (54%), Gaps = 14/183 (7%)
Query: 74 AMDKTLSSVANLAKLLPTGTVLAFQSLSPSFTNRGACLTSNRYLTAALLYLCVLSCIFFS 133
A+ +T + A+LA LLPTGTVLAFQ LSP F+N G C ++ +T+ L+ +C SC S
Sbjct: 40 AIGQTFQTTAHLANLLPTGTVLAFQLLSPIFSNGGQCDLVSKIMTSTLVAICGFSCFILS 99
Query: 134 FTDSFVGGDGKLYYGVATAKGFLVFNYXXXXXXXXXXXXQRRRREVFKDLRRLRIRWVDY 193
FTDS+ +G + YG+AT GF + + +R ++R++D+
Sbjct: 100 FTDSYKDKNGTICYGLATIHGFWIIDGSTTLPQELS--------------KRYKLRFIDF 145
Query: 194 VHAVFTALVFMTVAFSSTAVQSCYFPEAGDNVKQLLTNLPLGAGFLSTTVFLVFPTTRKG 253
VHA + VF V +C+FP ++LT LP+G G S+ +F FPTTR G
Sbjct: 146 VHAFMSLFVFGAVVLFDRNAVNCFFPSPSAEALEVLTALPVGVGVFSSMLFATFPTTRNG 205
Query: 254 IGY 256
IG+
Sbjct: 206 IGF 208
>AT1G09157.1 | chr1:2951665-2952396 REVERSE LENGTH=244
Length = 243
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 97/181 (53%), Gaps = 2/181 (1%)
Query: 75 MDKTLSSVANLAKLLPTGTVLAFQSLSPSFTNRGACLTSNRYLTAALLYLCVLSCIFFSF 134
+ KT+S + L LPTGT+L F+ + P+ G C N + LL LC +SC FF F
Sbjct: 61 VQKTVSKTSMLVNFLPTGTLLMFEMVLPTIYRDGDCNGINTLMIHLLLLLCAMSCFFFHF 120
Query: 135 TDSFVGGDGKLYYGVATAKGFLVFNYXXXXXXXXXXXXQRRRREVFKDLRRLRIRWVDYV 194
TDSF DGK+YYG T +G VF + V + +LR+ D+V
Sbjct: 121 TDSFKASDGKIYYGFVTPRGLAVFMKPPSPGFGGGDVIAEKEIPVTDERYKLRVN--DFV 178
Query: 195 HAVFTALVFMTVAFSSTAVQSCYFPEAGDNVKQLLTNLPLGAGFLSTTVFLVFPTTRKGI 254
H+V + LVFM +AFS V C FP + Q++ + PL G + + +FLVFPT+R G+
Sbjct: 179 HSVMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPLMVGIVCSALFLVFPTSRYGV 238
Query: 255 G 255
G
Sbjct: 239 G 239
>AT5G39650.1 | chr5:15875265-15875999 FORWARD LENGTH=245
Length = 244
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 94/179 (52%), Gaps = 2/179 (1%)
Query: 77 KTLSSVANLAKLLPTGTVLAFQSLSPSFTNRGACLTSNRYLTAALLYLCVLSCIFFSFTD 136
KT+S + L LPTGT+L F+ + PS G C N + LL LC +SC FF FTD
Sbjct: 64 KTVSKTSMLVNFLPTGTLLMFEMVLPSIYRDGDCNGINTLMIHLLLLLCAMSCFFFHFTD 123
Query: 137 SFVGGDGKLYYGVATAKGFLVFNYXXXXXXXXXXXXQRRRREVFKDLRRLRIRWVDYVHA 196
SF DGK+YYG T +G VF V D +L + D+VHA
Sbjct: 124 SFKASDGKIYYGFVTPRGLAVFMKPPPPEFGGGDVIAEAEIPVTDDRYKLTVN--DFVHA 181
Query: 197 VFTALVFMTVAFSSTAVQSCYFPEAGDNVKQLLTNLPLGAGFLSTTVFLVFPTTRKGIG 255
V + LVFM +AFS V C FP + Q++ + P+ G + + +FLVFPTTR G+G
Sbjct: 182 VMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPIMVGIVCSALFLVFPTTRYGVG 240
>AT3G21550.1 | chr3:7591708-7592262 REVERSE LENGTH=185
Length = 184
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 94/180 (52%), Gaps = 19/180 (10%)
Query: 76 DKTLSSVANLAKLLPTGTVLAFQSLSPSFTNRGACLTSNRYLTAALLYLCVLSCIFFSFT 135
D+T S V +L KLLPTGTV FQ L+P TN G CL N+YLT L+ +C SC F FT
Sbjct: 10 DRTYSGVGDLIKLLPTGTVFLFQFLNPVLTNNGHCLLINKYLTGVLIVICAFSCCFTCFT 69
Query: 136 DSFVGGDGKLYYGVATAKGFLVFNYXXXXXXXXXXXXQRRRREVFKDLRRLRIRWVDYVH 195
DS+ DG ++YGVAT KG + DL R+R D+VH
Sbjct: 70 DSYRTRDGYVHYGVATVKGLWPDSSSV-------------------DLSSKRLRVGDFVH 110
Query: 196 AVFTALVFMTVAFSSTAVQSCYFPEAGDNVKQLLTNLPLGAGFLSTTVFLVFPTTRKGIG 255
A F+ +VF ++ +C++P G K L LP G +S VF VFP+ R GIG
Sbjct: 111 AFFSLIVFSVISLLDANTVNCFYPGFGSAGKIFLMVLPPVIGVISGAVFTVFPSRRHGIG 170
>AT3G21520.1 | chr3:7582000-7582623 FORWARD LENGTH=208
Length = 207
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 94/182 (51%), Gaps = 17/182 (9%)
Query: 76 DKTLSSVANLAKLLPTGTVLAFQSLSPSFTNRGACLTSNRYLTAALLYLCVLSCIFFSFT 135
+K+L+ + +L KLLPTGT+ + L+P TN G C T N+ +++ L+ LC SC+F FT
Sbjct: 24 NKSLTGLESLIKLLPTGTLFIYLLLNPVLTNDGECSTGNKVMSSILVALCSFSCVFSCFT 83
Query: 136 DSFVGGDGKLYYGVATAKGFLVFNYXXXXXXXXXXXXQRRRREVFKDLRRLRIRWVDYVH 195
DSF G DG +G+ T KG + DL + ++R D+VH
Sbjct: 84 DSFKGVDGSRKFGIVTKKGLWTYAEPGSV-----------------DLSKYKLRIADFVH 126
Query: 196 AVFTALVFMTVAFSSTAVQSCYFPEAGDNVKQLLTNLPLGAGFLSTTVFLVFPTTRKGIG 255
A F VF T+ SC++P + K L+ LP G S T+F +FP+ R GIG
Sbjct: 127 AGFVLAVFGTLVLLDANTASCFYPRFRETQKTLVMALPPAVGVASATIFALFPSKRSGIG 186
Query: 256 YG 257
Y
Sbjct: 187 YA 188
>AT5G27370.1 | chr5:9667311-9667886 FORWARD LENGTH=192
Length = 191
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 13/186 (6%)
Query: 77 KTLSSVANLAKLLPTGTVLAFQSLSPSFTNRGACLTS--NRYLTAALLYLCVLSCIFFSF 134
++L S N A LLPTGT L F++L PSF+N G C N+ LT L+ C +C F SF
Sbjct: 7 RSLPSAGNFANLLPTGTALIFETLLPSFSNGGECNNKPVNKLLTITLISFCAAACFFSSF 66
Query: 135 TDSFVGGDGKLYYGVATAKGFLVFNYXXXXXXXXXXXXQRRRREVFKDLRRLRIRWVDYV 194
TDS+VG DG++YYG+AT+ G + N +RE R ++ +VD+V
Sbjct: 67 TDSYVGQDGRIYYGIATSNGLHILNDYPDEGYDPESGLTADKRE------RYKLSFVDFV 120
Query: 195 HAVFTALVFMTVAFSSTAVQSCYFPEAGDN-----VKQLLTNLPLGAGFLSTTVFLVFPT 249
HA + +VF+ +A S+ + C PE +N ++ + +++ F +FP+
Sbjct: 121 HAFVSVIVFLALAVESSDFRRCLLPEDDENSWGGHFVLMIKYFAVMVLTMASFFFAIFPS 180
Query: 250 TRKGIG 255
R+GIG
Sbjct: 181 KRRGIG 186
>AT4G28485.1 | chr4:14075321-14076011 REVERSE LENGTH=166
Length = 165
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 191 VDYVHAVFTALVFMTVAFSSTAVQSCYFPEAGDNVKQLLTNLPLGAGFLSTTVFLVFPTT 250
+D++HA+ + LVF V+ V C FP + K++LT+LP G + FL FPT
Sbjct: 95 LDFIHAIMSMLVFFAVSMFDQNVTRCLFPVPSEETKEILTSLPFVIGVICGAFFLAFPTR 154
Query: 251 RKGIG 255
R GIG
Sbjct: 155 RHGIG 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,870,287
Number of extensions: 179063
Number of successful extensions: 361
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 10
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)