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Os03g0370400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF679 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.07 (0.0687) R2 : 0.607
β1 : -5.46 (0.251) R2dD : 0.427 R2D : 0.262
β2 : 0.876 (0.176) R2dC : 0.0234 R2C : -0.0158
β3 : -3.65 (0.325) R2dE : 0.167 R2E : -0.16
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -18.6 (1.46) R2dD*E : 0.2 R2D*E : 0.00031
γ1 : -1.89 (0.149) R2dN8 : 0.193 R2N8 : 0.0252
σ : 1.28
deviance : 750.92
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C
peak time of C : 4.43
E
wheather : wind
threshold : 6.561
memory length : 4759
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20
open length of G : 7.32

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
742.16 1.28 9.07 -5.45 0.894 -3.56 1.82 -18.2 -1.87 4.34 6.7 4808 20 7.37
780.11 1.3 9.15 -5.31 0.813 -2.93 1.5 -- -2.04 4.64 10.31 9460 19.8 7.65
750.92 1.28 9.07 -5.46 0.876 -3.65 -- -18.6 -1.89 4.43 6.561 4759 20 7.32
785.69 1.31 9.14 -5.32 0.899 -2.89 -- -- -2.06 4.58 10.3 9462 19.8 7.49
795.29 1.31 9.07 -5.43 -- -3.61 -- -18.6 -1.85 -- 6.695 4764 20 7.3
1057.86 1.52 9.08 -5.17 0.905 -- 1.63 -- -1.7 4.3 -- -- -- --
1065.14 1.53 9.09 -5.19 0.919 -- -- -- -1.7 4.43 -- -- -- --
828.47 1.34 9.16 -5.36 -- -2.93 -- -- -2.04 -- 10.3 9459 19.7 9.25
1517.82 1.81 9.14 -- 0.797 -2.81 -- -- -1.61 4.61 10.3 9459 19.8 9.29
1110.37 1.56 9.09 -5.15 -- -- -- -- -1.68 -- -- -- -- --
1774.47 1.97 8.96 -- 0.822 -- -- -- -1.13 4.58 -- -- -- --
1451.37 1.77 9.09 -- -- -6.16 -- -- -1.48 -- 10.2 4863 20.2 11.3
1810.46 1.99 8.96 -- -- -- -- -- -1.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 772.38 wind 7.0 4320 > th dose dependent rect. 20 7
2 773.39 wind 7.0 4320 > th dose independent rect. 20 7
5 775.40 wind 7.0 4320 < th dose independent rect. 20 7
7 775.79 wind 5.0 4320 > th dose dependent rect. 20 2
10 776.65 atmosphere 995.0 14400 < th dose independent rect. 17 1
11 776.65 atmosphere 995.0 14400 < th dose dependent rect. 17 1
33 777.48 wind 7.0 4320 < th dose independent rect. 20 5
38 778.31 wind 7.0 4320 < th dose independent rect. 20 2
41 778.83 wind 7.0 4320 > th dose independent rect. 20 2
42 778.92 atmosphere 995.0 14400 > th dose independent rect. 17 1
50 780.46 precipitation 0.1 14400 > th dose dependent rect. 20 2
147 791.01 atmosphere 995.0 14400 > th dose independent rect. 13 6
152 791.40 atmosphere 995.0 14400 > th dose independent rect. 11 8
275 797.61 atmosphere 995.0 14400 < th dose dependent rect. 14 1
291 799.49 atmosphere 1005.0 14400 > th dose independent rect. 23 1
434 807.89 atmosphere 1005.0 4320 > th dose independent rect. 20 2
457 808.85 atmosphere 995.0 14400 < th dose dependent sin 23 NA
458 808.87 atmosphere 995.0 14400 > th dose independent sin 22 NA
459 808.89 atmosphere 995.0 14400 < th dose independent sin 22 NA
498 810.60 atmosphere 1005.0 14400 < th dose independent rect. 23 1
530 811.17 atmosphere 995.0 14400 > th dose independent rect. 19 21
789 816.49 atmosphere 995.0 14400 > th dose independent rect. 11 23
791 816.50 atmosphere 995.0 14400 > th dose independent rect. 14 23
792 816.51 atmosphere 995.0 14400 > th dose independent no NA NA
887 817.58 atmosphere 1005.0 4320 < th dose independent rect. 21 1
912 817.93 atmosphere 995.0 14400 > th dose independent rect. 14 20
920 817.97 atmosphere 995.0 14400 < th dose independent no NA NA
1000 820.09 radiation 1.0 14400 < th dose dependent rect. 23 1