Os01g0368700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF679 family protein.
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Os01g0368700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF679 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.53 | 0.71 | 6.56 | 0.347 | 2.41 | -3.03 | 0.483 | -2.48 | -0.18 | 0.101 | 0.9494 | 1440 | -- | -- |
| 231.49 | 0.709 | 6.6 | 0.122 | 2.47 | -2.54 | 0.496 | -- | -0.218 | 0.0688 | 1.141 | 1445 | -- | -- |
| 229.46 | 0.706 | 6.56 | 0.336 | 2.38 | -3.04 | -- | -2.54 | -0.18 | 0.0927 | 0.9369 | 1436 | -- | -- |
| 232.4 | 0.71 | 6.61 | 0.0854 | 2.46 | -2.57 | -- | -- | -0.221 | 0.0917 | 1.258 | 1445 | -- | -- |
| 371.31 | 0.897 | 6.55 | 0.239 | -- | -4.39 | -- | -1.68 | -0.241 | -- | 1.951 | 1267 | -- | -- |
| 302.62 | 0.816 | 6.53 | 0.707 | 2.42 | -- | 0.76 | -- | 0.113 | 0.154 | -- | -- | -- | -- |
| 305.12 | 0.818 | 6.53 | 0.677 | 2.42 | -- | -- | -- | 0.11 | 0.136 | -- | -- | -- | -- |
| 372.92 | 0.899 | 6.58 | 0.105 | -- | -4.25 | -- | -- | -0.285 | -- | 2.216 | 1262 | -- | -- |
| 232.55 | 0.71 | 6.61 | -- | 2.44 | -2.58 | -- | -- | -0.233 | 0.0982 | 1.26 | 1441 | -- | -- |
| 672.51 | 1.21 | 6.48 | 0.755 | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
| 317.21 | 0.833 | 6.54 | -- | 2.43 | -- | -- | -- | 0.0346 | 0.151 | -- | -- | -- | -- |
| 373.19 | 0.9 | 6.58 | -- | -- | -4.27 | -- | -- | -0.295 | -- | 2.19 | 1262 | -- | -- |
| 687.54 | 1.22 | 6.5 | -- | -- | -- | -- | -- | 0.0618 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.72 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 6 | 223.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 7 | 223.95 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 16 | 225.05 | wind | 5 | 43200 | > th | dose dependent | sin | 17 | NA |
| 21 | 225.22 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 22 | 225.23 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 25 | 225.26 | wind | 7 | 43200 | > th | dose independent | sin | 17 | NA |
| 26 | 225.26 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 27 | 225.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 29 | 225.32 | wind | 7 | 43200 | < th | dose independent | sin | 17 | NA |
| 31 | 225.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 17 |
| 32 | 225.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 35 | 225.36 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 38 | 225.39 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 13 |
| 41 | 225.41 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 44 | 225.45 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 72 | 225.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 85 | 225.69 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 90 | 225.73 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 131 | 226.16 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 137 | 226.22 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 168 | 226.41 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 16 |
| 171 | 226.43 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 185 | 226.44 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 189 | 226.45 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 195 | 226.47 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 197 | 226.48 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 205 | 226.51 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 219 | 226.58 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 257 | 226.69 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 258 | 226.70 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 263 | 226.71 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 279 | 226.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 297 | 226.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 304 | 226.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 305 | 226.84 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 358 | 227.03 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 382 | 227.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 473 | 227.41 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 496 | 227.50 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 497 | 227.50 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 498 | 227.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 509 | 227.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 514 | 227.59 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 515 | 227.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 520 | 227.62 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 524 | 227.63 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 528 | 227.64 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 549 | 227.78 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 558 | 227.85 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 566 | 227.90 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 574 | 227.98 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 594 | 228.08 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 595 | 228.08 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 597 | 228.14 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 599 | 228.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 609 | 228.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 617 | 228.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 656 | 228.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 677 | 228.43 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 691 | 228.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 708 | 228.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 740 | 228.64 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 748 | 228.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 758 | 228.69 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 761 | 228.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 811 | 228.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 821 | 228.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 868 | 228.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 893 | 229.01 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 905 | 229.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 909 | 229.12 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 926 | 229.19 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 936 | 229.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 937 | 229.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 983 | 229.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 18 |