FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0389700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF679 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.65 (0.0566) R2 : 0.61
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.78 (0.145) R2dC : 0.605 R2C : 0.507
β3 : -3.07 (0.287) R2dE : 0.106 R2E : 0.00541
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.168 (0.121) R2dN8 : 0.00225 R2N8 : -0.00505
σ : 1.06
deviance : 516.96
__
_____
C
peak time of C : 15.5
E
wheather : temperature
threshold : 25
memory length : 82
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
510.66 1.06 4.67 -0.571 3.77 -2.88 -0.397 -1.72 0.0735 15.5 25 82 2.17 --
511.35 1.05 4.65 -0.432 3.76 -2.98 -0.472 -- 0.121 15.5 25 78 2.22 --
511.12 1.05 4.67 -0.594 3.77 -2.87 -- -1.87 0.0678 15.5 25 82 2.19 --
511.97 1.05 4.66 -0.441 3.76 -2.98 -- -- 0.113 15.5 25 83 2.3 --
605.24 1.15 4.65 -0.494 -- -3.94 -- 0.427 0.0542 -- -6.927 86 2.81 --
620.71 1.17 4.73 -0.712 3.53 -- -0.597 -- -0.15 15.9 -- -- -- --
621.71 1.17 4.73 -0.72 3.53 -- -- -- -0.154 16 -- -- -- --
605.18 1.15 4.65 -0.525 -- -3.94 -- -- 0.0459 -- -6.307 75 2.71 --
516.96 1.06 4.65 -- 3.78 -3.07 -- -- 0.168 15.5 25 82 2.3 --
1304.4 1.69 4.71 -0.864 -- -- -- -- -0.248 -- -- -- -- --
635.36 1.18 4.71 -- 3.55 -- -- -- -0.0735 16 -- -- -- --
612.07 1.15 4.63 -- -- -4.01 -- -- 0.129 -- -2.757 70 2.68 --
1324.11 1.7 4.69 -- -- -- -- -- -0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 500.58 temperature 10.0 270 > th dose dependent rect. 3 8
12 509.95 temperature 25.0 10 > th dose dependent rect. 19 17
16 511.57 temperature 25.0 90 > th dose dependent sin 8 NA
21 512.99 temperature 20.0 10 > th dose dependent rect. 5 7
23 513.59 wind 5.0 270 < th dose independent rect. 16 6
27 514.16 temperature 20.0 270 > th dose dependent rect. 7 2
30 514.56 wind 7.0 270 < th dose independent rect. 17 16
32 514.86 temperature 25.0 10 > th dose independent rect. 7 5
34 515.63 temperature 25.0 90 > th dose independent rect. 18 18
39 516.99 temperature 10.0 90 > th dose dependent rect. 7 16
60 520.38 temperature 20.0 10 > th dose dependent rect. 7 5
81 522.80 temperature 10.0 270 > th dose dependent rect. 18 16
84 523.11 radiation 1.0 270 < th dose independent rect. 21 21
91 523.52 radiation 1.0 270 < th dose dependent rect. 21 21
96 523.79 temperature 25.0 270 > th dose independent rect. 6 4
107 524.43 wind 9.0 270 < th dose dependent rect. 16 6
126 526.14 temperature 10.0 270 > th dose dependent rect. 17 18
154 528.65 wind 5.0 30 < th dose independent rect. 18 7
174 529.77 temperature 30.0 30 < th dose independent rect. 1 17
191 530.49 radiation 10.0 43200 < th dose dependent rect. 19 7
199 530.72 precipitation 0.1 270 < th dose independent rect. 17 16
200 530.72 precipitation 0.1 270 < th dose dependent rect. 17 16
201 530.72 temperature 10.0 270 > th dose dependent rect. 5 17
243 532.89 temperature 15.0 10 > th dose dependent rect. 7 16
245 532.97 wind 7.0 270 < th dose dependent rect. 17 4
250 533.07 temperature 25.0 10 > th dose independent rect. 7 17
263 533.53 radiation 1.0 1440 > th dose independent rect. 9 3
287 534.51 wind 1.0 30 > th dose independent rect. 18 7
291 534.55 temperature 25.0 90 > th dose independent rect. 7 16
340 536.01 humidity 60.0 10 > th dose independent rect. 18 7
349 536.11 radiation 1.0 270 < th dose independent rect. 21 12
352 536.15 radiation 1.0 10 < th dose dependent rect. 18 7
371 536.49 precipitation 0.1 270 < th dose independent rect. 16 7
372 536.49 precipitation 0.1 270 < th dose dependent rect. 16 7
390 536.96 radiation 1.0 270 < th dose dependent rect. 21 11
391 536.99 radiation 30.0 14400 < th dose independent rect. 17 9
401 537.24 radiation 1.0 30 < th dose independent rect. 18 7
453 538.36 wind 9.0 270 < th dose independent rect. 23 17
454 538.36 temperature 25.0 90 < th dose independent rect. 23 20
469 538.73 wind 1.0 270 > th dose independent rect. 9 8
474 538.82 wind 9.0 30 < th dose independent rect. 1 17
477 538.90 atmosphere 1015.0 270 < th dose independent rect. 23 17
478 538.93 wind 9.0 270 < th dose independent rect. 9 8
505 539.39 precipitation 0.1 30 < th dose independent rect. 18 7
507 539.39 precipitation 0.1 30 < th dose dependent rect. 18 7
521 539.58 humidity 50.0 270 > th dose independent rect. 23 17
522 539.61 atmosphere 995.0 30 > th dose independent rect. 18 7
523 539.63 wind 1.0 270 > th dose independent rect. 16 7
529 539.69 temperature 10.0 30 > th dose independent rect. 18 7
531 539.69 radiation 20.0 30 < th dose independent rect. 18 7
534 539.69 temperature 10.0 30 > th dose independent rect. 1 17
536 539.69 atmosphere 1015.0 30 < th dose independent rect. 1 17
546 539.78 radiation 40.0 4320 < th dose dependent rect. 19 10
547 539.81 temperature 10.0 270 > th dose independent rect. 16 7
548 539.81 radiation 40.0 270 < th dose independent rect. 16 7
549 539.81 temperature 10.0 270 > th dose independent rect. 23 17
567 540.03 temperature 10.0 270 > th dose independent rect. 9 8
568 540.03 atmosphere 1015.0 270 < th dose independent rect. 9 8
569 540.03 temperature 10.0 270 > th dose independent rect. 17 16
644 541.23 radiation 1.0 270 > th dose independent rect. 17 17
669 541.52 temperature 15.0 10 > th dose dependent rect. 5 19
673 541.55 radiation 1.0 270 > th dose independent sin 10 NA
684 541.63 precipitation 0.1 270 < th dose independent rect. 9 8
686 541.63 precipitation 0.1 270 < th dose dependent rect. 9 8
687 541.65 precipitation 0.1 270 < th dose independent rect. 3 8
688 541.65 precipitation 0.1 270 < th dose dependent rect. 3 8
704 541.85 temperature 30.0 10 < th dose independent rect. 18 7
733 542.09 temperature 30.0 10 < th dose dependent rect. 24 18
756 542.29 atmosphere 1000.0 30 > th dose independent rect. 1 17
778 542.45 wind 5.0 90 < th dose independent sin 16 NA
790 542.57 radiation 1.0 1440 < th dose dependent rect. 19 7
825 543.00 humidity 50.0 270 > th dose independent rect. 17 16
829 543.05 precipitation 0.1 270 < th dose independent rect. 23 17
831 543.05 precipitation 0.1 270 < th dose dependent rect. 23 17
838 543.15 atmosphere 995.0 270 > th dose independent rect. 16 7
839 543.17 precipitation 0.1 30 < th dose independent rect. 1 17
840 543.17 precipitation 0.1 30 < th dose dependent rect. 1 17
852 543.28 temperature 25.0 90 < th dose independent rect. 23 22
901 543.61 temperature 10.0 1440 > th dose independent rect. 19 7
904 543.61 temperature 30.0 1440 < th dose independent rect. 19 7
908 543.61 humidity 50.0 1440 > th dose independent rect. 19 7
910 543.61 atmosphere 995.0 1440 > th dose independent rect. 19 7
911 543.61 radiation 1.0 1440 < th dose independent rect. 19 7
931 543.61 atmosphere 995.0 270 > th dose independent rect. 17 16
932 543.61 temperature 10.0 1440 > th dose independent rect. 2 17
981 544.03 radiation 40.0 270 < th dose independent rect. 17 16