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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0389200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF679 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.26 (0.0662) R2 : 0.282
β1 : 0.974 (0.247) R2dD : 0.0262 R2D : 0.00351
β2 : 0.959 (0.16) R2dC : 0.0566 R2C : 0.0468
β3 : -2.69 (0.248) R2dE : 0.195 R2E : 0.169
β4 : -2.51 (0.637) R2dD*C : 0.0249 R2D*C : 0.0377
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.128 (0.142) R2dN8 : 0.00172 R2N8 : 0.00272
σ : 1.24
deviance : 705.76
__
_____
C
peak time of C : 1.96
E
wheather : humidity
threshold : 81.27
memory length : 1443
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
705.74 1.25 4.26 0.987 0.964 -2.71 -2.52 0.158 0.128 1.97 81.17 1442 -- --
705.76 1.24 4.26 0.974 0.959 -2.69 -2.51 -- 0.128 1.96 81.27 1443 -- --
729.75 1.26 4.26 1.06 0.948 -2.77 -- 0.215 0.135 2.1 81 1444 -- --
729.63 1.26 4.26 1.08 0.967 -2.77 -- -- 0.134 2.24 81.2 1443 -- --
765.35 1.29 4.24 1.1 -- -2.74 -- 0.734 0.163 -- 82.68 1588 -- --
888.23 1.4 4.24 0.511 0.862 -- -3.06 -- 0.23 1.84 -- -- -- --
924.37 1.42 4.23 0.606 0.868 -- -- -- 0.247 2.14 -- -- -- --
766.2 1.29 4.24 1.03 -- -2.68 -- -- 0.17 -- 82.99 1588 -- --
757.14 1.28 4.27 -- 0.975 -2.63 -- -- 0.0663 2.31 83.76 1444 -- --
969.45 1.45 4.22 0.642 -- -- -- -- 0.267 -- -- -- -- --
934.05 1.43 4.25 -- 0.88 -- -- -- 0.179 2.15 -- -- -- --
792.61 1.31 4.26 -- -- -2.64 -- -- 0.0942 -- 85 1609 -- --
980.33 1.46 4.24 -- -- -- -- -- 0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 691.24 humidity 50 1440 > th dose dependent rect. 12 10
5 692.96 humidity 90 1440 < th dose dependent rect. 12 10
43 698.06 humidity 50 1440 > th dose dependent sin 19 NA
58 698.83 humidity 90 1440 < th dose dependent sin 19 NA
73 699.75 temperature 25 1440 > th dose dependent rect. 13 2
116 701.36 humidity 80 1440 < th dose dependent rect. 12 21
298 705.05 temperature 25 1440 > th dose dependent rect. 11 18
307 705.12 temperature 25 1440 > th dose dependent rect. 23 18
308 705.12 temperature 25 1440 > th dose dependent rect. 21 20
310 705.14 temperature 25 1440 > th dose dependent rect. 13 20
347 705.37 temperature 25 1440 > th dose dependent rect. 11 22
349 705.39 temperature 25 1440 > th dose dependent rect. 13 15
353 705.41 temperature 25 1440 > th dose dependent sin 20 NA
482 706.03 humidity 80 1440 < th dose dependent no NA NA
537 706.39 temperature 25 1440 > th dose dependent no NA NA
582 706.71 humidity 50 1440 > th dose dependent rect. 12 2
586 706.72 humidity 80 1440 < th dose dependent rect. 16 23
661 707.59 humidity 80 1440 < th dose dependent rect. 18 23
754 708.98 radiation 1 1440 < th dose independent rect. 11 19
760 709.08 humidity 60 1440 > th dose independent rect. 11 8
791 709.54 humidity 70 1440 < th dose independent sin 14 NA
797 709.57 humidity 60 1440 < th dose independent rect. 11 7
812 709.74 humidity 60 1440 > th dose independent rect. 11 22
817 709.85 humidity 60 1440 > th dose independent rect. 11 13
823 709.88 humidity 60 1440 > th dose independent rect. 11 10
829 709.94 humidity 60 1440 > th dose independent rect. 11 16
867 710.54 humidity 90 1440 < th dose dependent rect. 16 1
876 710.67 humidity 60 1440 < th dose independent rect. 11 22
900 710.89 wind 9 43200 > th dose dependent rect. 14 9
978 711.75 temperature 30 1440 < th dose independent rect. 11 13
979 711.75 temperature 30 1440 < th dose independent rect. 11 21
986 711.81 temperature 30 1440 < th dose independent rect. 11 10
991 711.83 temperature 30 1440 < th dose independent rect. 11 8
1000 711.88 temperature 30 1440 < th dose independent rect. 11 16