BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0389200 Os01g0389200|AK061076
(264 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02430.1 | chr3:499360-500019 FORWARD LENGTH=220 110 8e-25
AT5G46090.1 | chr5:18693485-18694129 FORWARD LENGTH=215 106 1e-23
AT4G18425.1 | chr4:10181421-10182062 REVERSE LENGTH=214 105 4e-23
AT4G24310.1 | chr4:12600900-12601541 FORWARD LENGTH=214 98 4e-21
AT5G27370.1 | chr5:9667311-9667886 FORWARD LENGTH=192 95 4e-20
AT3G21550.1 | chr3:7591708-7592262 REVERSE LENGTH=185 88 4e-18
AT3G21520.1 | chr3:7582000-7582623 FORWARD LENGTH=208 85 3e-17
AT1G09157.1 | chr1:2951665-2952396 REVERSE LENGTH=244 84 9e-17
AT5G39650.1 | chr5:15875265-15875999 FORWARD LENGTH=245 79 2e-15
AT4G28485.1 | chr4:14075321-14076011 REVERSE LENGTH=166 47 1e-05
>AT3G02430.1 | chr3:499360-500019 FORWARD LENGTH=220
Length = 219
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Query: 73 MASTANLAQLLPTGTALAYQALSTSFTNHGQCYRSNRWLTAGLVAVLTASSIFFSLTDSV 132
+ S ANL+ LLPTGT LA+Q L+ FT++G C + R+LTA L+ +L AS S TDSV
Sbjct: 45 LTSAANLSNLLPTGTLLAFQLLTPVFTSNGVCDHATRFLTAVLLFLLAASCFVSSFTDSV 104
Query: 133 VGRGGKLYYGMATPRGFNVFNLSREEEEAQELSRTKLRELRVRPLDIXXXXXXXXXXXXX 192
G +Y+G T +G V + + L L + R+R +D
Sbjct: 105 KADDGTIYFGFVTFKGMWVV----DYPDPSGLGLPDLAKYRMRFVDWIHATLSVLVFGAV 160
Query: 193 XXSDVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKRKGIGYTDT 245
D +T CF+P +TK +L +P+G+ M + +F++FP +R GIGY T
Sbjct: 161 ALRDKYITDCFYPSPEAETKHVLDIVPVGVGVMCSLLFMVFPARRHGIGYLVT 213
>AT5G46090.1 | chr5:18693485-18694129 FORWARD LENGTH=215
Length = 214
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 71 KVMASTANLAQLLPTGTALAYQALSTSFTNHGQCYRSNRWLTAGLVAVLTASSIFFSLTD 130
K +TANLA LLPTGT LA+Q LS TN G+C ++R++TA LV++ S S TD
Sbjct: 44 KTFQTTANLANLLPTGTVLAFQILSPICTNVGRCDLTSRFMTALLVSICGFSCFILSFTD 103
Query: 131 SVVGRGGKLYYGMATPRGFNVFNLSREEEEAQELSRTKLRELRVRPLDIXXXXXXXXXXX 190
S G + YG AT GF + + S QELS++ ++R +D
Sbjct: 104 SYKDLNGSVCYGFATIHGFWIIDGS--ATLPQELSKSY----KLRFIDFVHAIMSFLVFG 157
Query: 191 XXXXSDVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKRKGIGY 242
D + CF+P+ + ELL LP+ + + VF FPT R GIG+
Sbjct: 158 AVVLFDQNVVNCFYPEPSAEVVELLTTLPVAVGVFCSMVFAKFPTTRHGIGF 209
>AT4G18425.1 | chr4:10181421-10182062 REVERSE LENGTH=214
Length = 213
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 71 KVMASTANLAQLLPTGTALAYQALSTSFTNHGQCYRSNRWLTAGLVAVLTASSIFFSLTD 130
+ +TA+LA LLPTGT LA+Q LS F+N GQC ++ +T+ LVA+ S S TD
Sbjct: 43 QTFQTTAHLANLLPTGTVLAFQLLSPIFSNGGQCDLVSKIMTSTLVAICGFSCFILSFTD 102
Query: 131 SVVGRGGKLYYGMATPRGFNVFNLSREEEEAQELSRTKLRELRVRPLDIXXXXXXXXXXX 190
S + G + YG+AT GF + + S QELS + ++R +D
Sbjct: 103 SYKDKNGTICYGLATIHGFWIIDGS--TTLPQELS----KRYKLRFIDFVHAFMSLFVFG 156
Query: 191 XXXXSDVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKRKGIGY 242
D CFFP + E+L LP+G+ S+ +F FPT R GIG+
Sbjct: 157 AVVLFDRNAVNCFFPSPSAEALEVLTALPVGVGVFSSMLFATFPTTRNGIGF 208
>AT4G24310.1 | chr4:12600900-12601541 FORWARD LENGTH=214
Length = 213
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 71 KVMASTANLAQLLPTGTALAYQALSTSFTNHGQCYRSNRWLTAGLVAVLTASSIFFSLTD 130
+ + S ANLA LLPTGT LA+ L FT++G C + LT L+ +L+ S S TD
Sbjct: 37 QTLTSAANLANLLPTGTLLAFTLLIPVFTSNGSCDYPTQVLTIVLLTLLSISCFLSSFTD 96
Query: 131 SVVGRGGKLYYGMATPRGFNVFNLSREEEEAQELSRTKLRELRVRPLDIXXXXXXXXXXX 190
SV G +YYG AT +G VF + + L L + R+R +D
Sbjct: 97 SVKAEDGNVYYGFATRKGMWVF----DYPDPDGLGLPNLSKYRIRIIDWIHAVLSVLVFG 152
Query: 191 XXXXSDVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKRKGIGY 242
D CF+P +TK++L +P+G+ + +FL+FP +R GIGY
Sbjct: 153 AVALRDKNAVSCFYPAPEQETKKVLDIVPMGVGVICGMLFLVFPARRHGIGY 204
>AT5G27370.1 | chr5:9667311-9667886 FORWARD LENGTH=192
Length = 191
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 9/183 (4%)
Query: 71 KVMASTANLAQLLPTGTALAYQALSTSFTNHGQCYRS--NRWLTAGLVAVLTASSIFFSL 128
+ + S N A LLPTGTAL ++ L SF+N G+C N+ LT L++ A+ F S
Sbjct: 7 RSLPSAGNFANLLPTGTALIFETLLPSFSNGGECNNKPVNKLLTITLISFCAAACFFSSF 66
Query: 129 TDSVVGRGGKLYYGMATPRGFNVFNLSREEEEAQE--LSRTKLRELRVRPLDIXXXXXXX 186
TDS VG+ G++YYG+AT G ++ N +E E L+ K ++ +D
Sbjct: 67 TDSYVGQDGRIYYGIATSNGLHILNDYPDEGYDPESGLTADKRERYKLSFVDFVHAFVSV 126
Query: 187 XXXXXXXXSDVGLTKCFFPD-----AGNDTKELLKNLPLGMAFMSTFVFLLFPTKRKGIG 241
+C P+ G ++K + + M++F F +FP+KR+GIG
Sbjct: 127 IVFLALAVESSDFRRCLLPEDDENSWGGHFVLMIKYFAVMVLTMASFFFAIFPSKRRGIG 186
Query: 242 YTD 244
+D
Sbjct: 187 ISD 189
>AT3G21550.1 | chr3:7591708-7592262 REVERSE LENGTH=185
Length = 184
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 68 MTDKVMASTANLAQLLPTGTALAYQALSTSFTNHGQCYRSNRWLTAGLVAVLTASSIFFS 127
+ D+ + +L +LLPTGT +Q L+ TN+G C N++LT L+ + S F
Sbjct: 8 IRDRTYSGVGDLIKLLPTGTVFLFQFLNPVLTNNGHCLLINKYLTGVLIVICAFSCCFTC 67
Query: 128 LTDSVVGRGGKLYYGMATPRGFNVFNLSREEEEAQELSRTKLRELRVRPLDIXXXXXXXX 187
TDS R G ++YG+AT +G + S L R+R D
Sbjct: 68 FTDSYRTRDGYVHYGVATVKGL-----------WPDSSSVDLSSKRLRVGDFVHAFFSLI 116
Query: 188 XXXXXXXSDVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKRKGIG 241
D CF+P G+ K L LP + +S VF +FP++R GIG
Sbjct: 117 VFSVISLLDANTVNCFYPGFGSAGKIFLMVLPPVIGVISGAVFTVFPSRRHGIG 170
>AT3G21520.1 | chr3:7582000-7582623 FORWARD LENGTH=208
Length = 207
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 9/174 (5%)
Query: 69 TDKVMASTANLAQLLPTGTALAYQALSTSFTNHGQCYRSNRWLTAGLVAVLTASSIFFSL 128
T+K + +L +LLPTGT Y L+ TN G+C N+ +++ LVA+ + S +F
Sbjct: 23 TNKSLTGLESLIKLLPTGTLFIYLLLNPVLTNDGECSTGNKVMSSILVALCSFSCVFSCF 82
Query: 129 TDSVVGRGGKLYYGMATPRGFNVFNLSREEEEAQELSRTKLRELRVRPLDIXXXXXXXXX 188
TDS G G +G+ T +G + E + +LS+ KL R D
Sbjct: 83 TDSFKGVDGSRKFGIVTKKGLWTY----AEPGSVDLSKYKL-----RIADFVHAGFVLAV 133
Query: 189 XXXXXXSDVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKRKGIGY 242
D CF+P K L+ LP + S +F LFP+KR GIGY
Sbjct: 134 FGTLVLLDANTASCFYPRFRETQKTLVMALPPAVGVASATIFALFPSKRSGIGY 187
>AT1G09157.1 | chr1:2951665-2952396 REVERSE LENGTH=244
Length = 243
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 16/188 (8%)
Query: 69 TDKVMASTANLAQLLPTGTALAYQALSTSFTNHGQCYRSNRWLTAGLVAVLTASSIFFSL 128
K ++ T+ L LPTGT L ++ + + G C N + L+ + S FF
Sbjct: 61 VQKTVSKTSMLVNFLPTGTLLMFEMVLPTIYRDGDCNGINTLMIHLLLLLCAMSCFFFHF 120
Query: 129 TDSVVGRGGKLYYGMATPRGFNVF-----------NLSREEEEAQELSRTKLRELRVRPL 177
TDS GK+YYG TPRG VF ++ E+E R KLR
Sbjct: 121 TDSFKASDGKIYYGFVTPRGLAVFMKPPSPGFGGGDVIAEKEIPVTDERYKLRV-----N 175
Query: 178 DIXXXXXXXXXXXXXXXSDVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKR 237
D SD +T C FP + +++++ PL + + + +FL+FPT R
Sbjct: 176 DFVHSVMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPLMVGIVCSALFLVFPTSR 235
Query: 238 KGIGYTDT 245
G+G T
Sbjct: 236 YGVGCMST 243
>AT5G39650.1 | chr5:15875265-15875999 FORWARD LENGTH=245
Length = 244
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 16/184 (8%)
Query: 69 TDKVMASTANLAQLLPTGTALAYQALSTSFTNHGQCYRSNRWLTAGLVAVLTASSIFFSL 128
K ++ T+ L LPTGT L ++ + S G C N + L+ + S FF
Sbjct: 62 VQKTVSKTSMLVNFLPTGTLLMFEMVLPSIYRDGDCNGINTLMIHLLLLLCAMSCFFFHF 121
Query: 129 TDSVVGRGGKLYYGMATPRGFNVF-----------NLSREEEEAQELSRTKLRELRVRPL 177
TDS GK+YYG TPRG VF ++ E E R KL
Sbjct: 122 TDSFKASDGKIYYGFVTPRGLAVFMKPPPPEFGGGDVIAEAEIPVTDDRYKLTV-----N 176
Query: 178 DIXXXXXXXXXXXXXXXSDVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKR 237
D SD +T C FP + +++++ P+ + + + +FL+FPT R
Sbjct: 177 DFVHAVMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPIMVGIVCSALFLVFPTTR 236
Query: 238 KGIG 241
G+G
Sbjct: 237 YGVG 240
>AT4G28485.1 | chr4:14075321-14076011 REVERSE LENGTH=166
Length = 165
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 196 DVGLTKCFFPDAGNDTKELLKNLPLGMAFMSTFVFLLFPTKRKGIG 241
D +T+C FP +TKE+L +LP + + FL FPT+R GIG
Sbjct: 114 DQNVTRCLFPVPSEETKEILTSLPFVIGVICGAFFLAFPTRRHGIG 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,013,623
Number of extensions: 178205
Number of successful extensions: 438
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 10
Length of query: 264
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,447,217
Effective search space: 1410685239
Effective search space used: 1410685239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)