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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0388700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF679 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.96 (0.0306) R2 : 0.182
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.804 (0.0799) R2dC : 0.182 R2C : 0.182
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00248 (0.0645) R2dN8 : 3.43e-06 R2N8 : -0.000426
σ : 0.578
deviance : 152.62
__
_____
C
peak time of C : 5.09
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.59 0.557 3.99 -0.553 0.885 0.487 -0.725 -2.08 -0.0575 5.04 84.47 1630 -- --
145.42 0.562 3.95 -0.38 0.82 0.355 -0.444 -- 0.0128 5.25 65.95 1780 -- --
141.6 0.554 3.98 -0.549 0.826 0.457 -- -1.98 -0.0605 4.98 86 1489 -- --
145.87 0.563 3.94 -0.4 0.823 0.406 -- -- 0.0461 5.17 65 1766 -- --
172.59 0.612 3.98 -0.548 -- 0.663 -- -1.97 -0.0427 -- 87.54 1281 -- --
149.45 0.573 3.96 -0.319 0.813 -- -0.446 -- -0.0351 5.16 -- -- -- --
149.93 0.573 3.96 -0.32 0.81 -- -- -- -0.0331 5.08 -- -- -- --
176.73 0.622 3.98 -0.284 -- -0.524 -- -- -0.0268 -- 87.54 1281 -- --
149.85 0.57 3.94 -- 0.823 0.336 -- -- 0.0757 5.16 67 1772 -- --
184.33 0.634 3.97 -0.291 -- -- -- -- -0.0125 -- -- -- -- --
152.62 0.578 3.96 -- 0.804 -- -- -- 0.00248 5.09 -- -- -- --
177.29 0.622 3.96 -- -- -0.581 -- -- 0.024 -- 95.01 1922 -- --
186.56 0.638 3.97 -- -- -- -- -- 0.0197 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.96 humidity 60 14400 > th dose independent rect. 5 3
2 138.11 humidity 70 4320 > th dose independent rect. 21 10
5 138.44 humidity 70 4320 > th dose independent rect. 22 7
6 138.44 temperature 30 10 < th dose independent rect. 17 12
7 138.53 humidity 70 4320 < th dose independent rect. 20 11
9 138.61 humidity 70 4320 < th dose dependent rect. 20 11
10 138.62 radiation 1 30 < th dose dependent rect. 21 23
12 138.93 humidity 60 90 > th dose independent rect. 16 12
14 139.01 humidity 50 10 > th dose dependent rect. 16 13
15 139.13 humidity 60 14400 > th dose independent rect. 24 8
17 139.14 radiation 1 30 < th dose dependent rect. 17 12
24 139.38 humidity 60 10 > th dose independent rect. 16 13
31 139.63 humidity 60 14400 > th dose independent rect. 3 5
32 139.64 humidity 50 90 > th dose dependent rect. 16 12
38 139.82 temperature 20 10 > th dose dependent rect. 15 16
47 139.93 radiation 30 720 < th dose dependent rect. 16 2
49 139.98 radiation 1 30 < th dose independent rect. 17 12
56 140.07 wind 3 10 < th dose dependent rect. 5 2
68 140.16 radiation 1 30 < th dose dependent rect. 7 22
69 140.17 radiation 1 720 > th dose dependent rect. 18 12
77 140.21 humidity 90 90 < th dose independent rect. 19 19
85 140.26 humidity 60 30 > th dose dependent sin 6 NA
91 140.31 radiation 10 720 > th dose dependent rect. 17 14
92 140.32 temperature 20 10 > th dose independent rect. 5 2
98 140.37 humidity 50 4320 > th dose independent rect. 16 1
100 140.37 radiation 1 10 > th dose independent rect. 15 15
106 140.45 radiation 1 30 < th dose independent rect. 21 23
109 140.48 humidity 70 4320 > th dose independent rect. 21 1
110 140.49 humidity 70 4320 < th dose independent rect. 6 2
120 140.50 wind 9 4320 > th dose dependent rect. 14 1
125 140.55 humidity 70 4320 > th dose independent rect. 22 5
167 140.65 wind 9 4320 > th dose independent rect. 14 1
172 140.66 humidity 60 90 > th dose dependent rect. 23 12
173 140.66 temperature 30 10 < th dose dependent rect. 16 13
178 140.67 radiation 10 720 > th dose dependent rect. 6 1
199 140.69 radiation 1 30 < th dose dependent sin 13 NA
207 140.79 wind 9 4320 < th dose independent rect. 14 1
235 140.89 temperature 20 10 > th dose dependent rect. 5 1
257 140.96 humidity 60 90 > th dose dependent rect. 21 14
263 140.97 humidity 90 1440 < th dose dependent rect. 18 20
265 140.97 humidity 50 10 > th dose dependent rect. 6 23
267 140.99 humidity 70 4320 < th dose dependent rect. 6 1
278 141.00 radiation 10 720 < th dose independent rect. 16 2
281 141.02 humidity 70 4320 > th dose independent rect. 20 4
302 141.09 humidity 90 90 < th dose independent rect. 10 22
309 141.11 radiation 1 10 > th dose independent sin 12 NA
325 141.13 humidity 90 10 < th dose independent rect. 19 20
329 141.13 humidity 50 1440 > th dose dependent rect. 6 19
338 141.15 humidity 90 1440 < th dose dependent rect. 10 22
341 141.17 radiation 1 10 < th dose independent sin 12 NA
358 141.19 humidity 60 14400 < th dose independent rect. 20 1
360 141.19 radiation 20 14400 > th dose independent rect. 17 1
414 141.19 humidity 60 14400 < th dose dependent rect. 20 1
416 141.19 radiation 20 14400 > th dose dependent rect. 17 1
432 141.19 radiation 30 720 < th dose dependent rect. 15 4
474 141.20 humidity 70 1440 < th dose dependent rect. 15 2
480 141.21 humidity 70 10 < th dose dependent rect. 16 17
483 141.22 radiation 1 270 < th dose independent rect. 8 1
484 141.22 radiation 1 270 < th dose dependent rect. 8 1
486 141.23 humidity 80 1440 < th dose dependent rect. 15 17
487 141.23 humidity 90 1440 < th dose dependent rect. 6 19
496 141.25 humidity 90 1440 < th dose dependent rect. 3 22
540 141.31 radiation 1 30 < th dose dependent rect. 3 23
545 141.33 humidity 90 1440 < th dose dependent no NA NA
593 141.37 humidity 80 1440 > th dose independent rect. 20 19
594 141.37 humidity 80 1440 < th dose independent rect. 18 20
603 141.38 humidity 50 1440 > th dose dependent rect. 18 22
605 141.38 humidity 90 1440 < th dose dependent rect. 23 23
613 141.40 humidity 80 1440 > th dose independent rect. 18 20
647 141.45 wind 1 90 < th dose independent rect. 24 6
648 141.45 radiation 20 1440 < th dose independent rect. 13 18
653 141.45 humidity 90 10 < th dose dependent rect. 20 13
665 141.47 temperature 20 10 > th dose independent rect. 14 17
675 141.48 radiation 20 720 < th dose independent rect. 15 4
682 141.48 humidity 90 270 > th dose dependent rect. 19 14
688 141.49 radiation 20 1440 < th dose independent rect. 13 2
694 141.49 humidity 50 1440 > th dose dependent rect. 9 16
698 141.49 humidity 50 1440 > th dose dependent rect. 9 23
706 141.50 humidity 90 1440 < th dose dependent rect. 9 16
721 141.52 humidity 90 90 > th dose dependent rect. 20 20
780 141.57 wind 3 10 < th dose independent rect. 5 1
796 141.58 humidity 80 1440 < th dose dependent sin 11 NA
807 141.59 humidity 90 90 > th dose dependent rect. 20 16
835 141.62 radiation 1 10 > th dose independent rect. 18 12
843 141.63 humidity 50 1440 > th dose dependent no NA NA
845 141.63 radiation 1 30 < th dose dependent no NA NA
864 141.64 humidity 80 1440 < th dose dependent sin 15 NA
880 141.64 humidity 50 1440 > th dose dependent rect. 23 23
912 141.66 humidity 50 1440 > th dose dependent rect. 15 23
917 141.67 humidity 80 1440 < th dose dependent rect. 11 11
955 141.69 radiation 30 720 < th dose dependent rect. 16 10
975 141.70 humidity 50 1440 > th dose dependent sin 21 NA
992 141.71 humidity 90 1440 < th dose dependent sin 19 NA