BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0388700 Os01g0388700|AK071508
(225 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02430.1 | chr3:499360-500019 FORWARD LENGTH=220 115 3e-26
AT4G18425.1 | chr4:10181421-10182062 REVERSE LENGTH=214 110 8e-25
AT5G46090.1 | chr5:18693485-18694129 FORWARD LENGTH=215 107 7e-24
AT4G24310.1 | chr4:12600900-12601541 FORWARD LENGTH=214 103 5e-23
AT5G27370.1 | chr5:9667311-9667886 FORWARD LENGTH=192 99 3e-21
AT3G21550.1 | chr3:7591708-7592262 REVERSE LENGTH=185 98 4e-21
AT5G39650.1 | chr5:15875265-15875999 FORWARD LENGTH=245 97 5e-21
AT1G09157.1 | chr1:2951665-2952396 REVERSE LENGTH=244 93 1e-19
AT3G21520.1 | chr3:7582000-7582623 FORWARD LENGTH=208 92 2e-19
>AT3G02430.1 | chr3:499360-500019 FORWARD LENGTH=220
Length = 219
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 4/175 (2%)
Query: 43 AVDKTLSGASDLLKLLPTGTVLAFQALAPSFSNHGVCHAVANRYLVLALIGACAASCMLL 102
A+ TL+ A++L LLPTGT+LAFQ L P F+++GVC A R+L L+ AASC +
Sbjct: 40 AMSNTLTSAANLSNLLPTGTLLAFQLLTPVFTSNGVCDH-ATRFLTAVLLFLLAASCFVS 98
Query: 103 SFTDSLIGHDGKLYYGVATLRGFRPFNFAGTREEHGTVFKDLSRFRITALDXXXXXXXXX 162
SFTDS+ DG +Y+G T +G ++ + G DL+++R+ +D
Sbjct: 99 SFTDSVKADDGTIYFGFVTFKGMWVVDYP---DPSGLGLPDLAKYRMRFVDWIHATLSVL 155
Query: 163 XXXXXXXXXXXXQTCLFPEAEADMRELLVNLPLGAGFLSSMVFMIFPTTRKSIGY 217
C +P EA+ + +L +P+G G + S++FM+FP R IGY
Sbjct: 156 VFGAVALRDKYITDCFYPSPEAETKHVLDIVPVGVGVMCSLLFMVFPARRHGIGY 210
>AT4G18425.1 | chr4:10181421-10182062 REVERSE LENGTH=214
Length = 213
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Query: 43 AVDKTLSGASDLLKLLPTGTVLAFQALAPSFSNHGVCHAVANRYLVLALIGACAASCMLL 102
A+ +T + L LLPTGTVLAFQ L+P FSN G C V+ + + L+ C SC +L
Sbjct: 40 AIGQTFQTTAHLANLLPTGTVLAFQLLSPIFSNGGQCDLVS-KIMTSTLVAICGFSCFIL 98
Query: 103 SFTDSLIGHDGKLYYGVATLRGFRPFNFAGTREEHGTVFKDLSRFRITALDXXXXXXXXX 162
SFTDS +G + YG+AT+ GF + + T + + R+++ +D
Sbjct: 99 SFTDSYKDKNGTICYGLATIHGFWIIDGSTTLPQELS-----KRYKLRFIDFVHAFMSLF 153
Query: 163 XXXXXXXXXXXXQTCLFPEAEADMRELLVNLPLGAGFLSSMVFMIFPTTRKSIGY 217
C FP A+ E+L LP+G G SSM+F FPTTR IG+
Sbjct: 154 VFGAVVLFDRNAVNCFFPSPSAEALEVLTALPVGVGVFSSMLFATFPTTRNGIGF 208
>AT5G46090.1 | chr5:18693485-18694129 FORWARD LENGTH=215
Length = 214
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 91/176 (51%), Gaps = 8/176 (4%)
Query: 43 AVDKTLSGASDLLKLLPTGTVLAFQALAPSFSNHGVCHAVANRYLVLALIGACAASCMLL 102
A+ KT ++L LLPTGTVLAFQ L+P +N G C + +R++ L+ C SC +L
Sbjct: 41 AIGKTFQTTANLANLLPTGTVLAFQILSPICTNVGRCD-LTSRFMTALLVSICGFSCFIL 99
Query: 103 SFTDSLIGHDGKLYYGVATLRGFRPFNFAGTREEHGTVFKDLSR-FRITALDXXXXXXXX 161
SFTDS +G + YG AT+ GF + + T + +LS+ +++ +D
Sbjct: 100 SFTDSYKDLNGSVCYGFATIHGFWIIDGSATLPQ------ELSKSYKLRFIDFVHAIMSF 153
Query: 162 XXXXXXXXXXXXXQTCLFPEAEADMRELLVNLPLGAGFLSSMVFMIFPTTRKSIGY 217
C +PE A++ ELL LP+ G SMVF FPTTR IG+
Sbjct: 154 LVFGAVVLFDQNVVNCFYPEPSAEVVELLTTLPVAVGVFCSMVFAKFPTTRHGIGF 209
>AT4G24310.1 | chr4:12600900-12601541 FORWARD LENGTH=214
Length = 213
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 3 PNAVHVQMPAVDTEACCDDEKNPQPAREIISDHVAVRPTPAVDKTLSGASDLLKLLPTGT 62
P+++ + P E E PQ R+ S H + +TL+ A++L LLPTGT
Sbjct: 4 PSSLTQRNPTSSQE---QSESVPQLRRQT-SQHAVM------SQTLTSAANLANLLPTGT 53
Query: 63 VLAFQALAPSFSNHGVCHAVANRYLVLALIGACAASCMLLSFTDSLIGHDGKLYYGVATL 122
+LAF L P F+++G C + L + L+ + SC L SFTDS+ DG +YYG AT
Sbjct: 54 LLAFTLLIPVFTSNGSCD-YPTQVLTIVLLTLLSISCFLSSFTDSVKAEDGNVYYGFATR 112
Query: 123 RGFRPFNFAGTREEHGTVFKDLSRFRITALDXXXXXXXXXXXXXXXXXXXXXQTCLFPEA 182
+G F++ + G +LS++RI +D +C +P
Sbjct: 113 KGMWVFDYP---DPDGLGLPNLSKYRIRIIDWIHAVLSVLVFGAVALRDKNAVSCFYPAP 169
Query: 183 EADMRELLVNLPLGAGFLSSMVFMIFPTTRKSIGY 217
E + +++L +P+G G + M+F++FP R IGY
Sbjct: 170 EQETKKVLDIVPMGVGVICGMLFLVFPARRHGIGY 204
>AT5G27370.1 | chr5:9667311-9667886 FORWARD LENGTH=192
Length = 191
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 46 KTLSGASDLLKLLPTGTVLAFQALAPSFSNHGVCHAV-ANRYLVLALIGACAASCMLLSF 104
++L A + LLPTGT L F+ L PSFSN G C+ N+ L + LI CAA+C SF
Sbjct: 7 RSLPSAGNFANLLPTGTALIFETLLPSFSNGGECNNKPVNKLLTITLISFCAAACFFSSF 66
Query: 105 TDSLIGHDGKLYYGVATLRGFRPFN---FAGTREEHGTVFKDLSRFRITALDXXXXXXXX 161
TDS +G DG++YYG+AT G N G E G R++++ +D
Sbjct: 67 TDSYVGQDGRIYYGIATSNGLHILNDYPDEGYDPESGLTADKRERYKLSFVDFVHAFVSV 126
Query: 162 XXXXXXXXXXXXXQTCLFPEAEADMRE-----LLVNLPLGAGFLSSMVFMIFPTTRKSIG 216
+ CL PE + + ++ + ++S F IFP+ R+ IG
Sbjct: 127 IVFLALAVESSDFRRCLLPEDDENSWGGHFVLMIKYFAVMVLTMASFFFAIFPSKRRGIG 186
Query: 217 YTDM 220
+D+
Sbjct: 187 ISDI 190
>AT3G21550.1 | chr3:7591708-7592262 REVERSE LENGTH=185
Length = 184
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 83/172 (48%), Gaps = 11/172 (6%)
Query: 45 DKTLSGASDLLKLLPTGTVLAFQALAPSFSNHGVCHAVANRYLVLALIGACAASCMLLSF 104
D+T SG DL+KLLPTGTV FQ L P +N+G C + N+YL LI CA SC F
Sbjct: 10 DRTYSGVGDLIKLLPTGTVFLFQFLNPVLTNNGHCLLI-NKYLTGVLIVICAFSCCFTCF 68
Query: 105 TDSLIGHDGKLYYGVATLRGFRPFNFAGTREEHGTVFKDLSRFRITALDXXXXXXXXXXX 164
TDS DG ++YGVAT++G P + +V DLS R+ D
Sbjct: 69 TDSYRTRDGYVHYGVATVKGLWP--------DSSSV--DLSSKRLRVGDFVHAFFSLIVF 118
Query: 165 XXXXXXXXXXQTCLFPEAEADMRELLVNLPLGAGFLSSMVFMIFPTTRKSIG 216
C +P + + L+ LP G +S VF +FP+ R IG
Sbjct: 119 SVISLLDANTVNCFYPGFGSAGKIFLMVLPPVIGVISGAVFTVFPSRRHGIG 170
>AT5G39650.1 | chr5:15875265-15875999 FORWARD LENGTH=245
Length = 244
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 86/183 (46%), Gaps = 12/183 (6%)
Query: 43 AVDKTLSGASDLLKLLPTGTVLAFQALAPSFSNHGVCHAVANRYLVLALIGACAASCMLL 102
V KT+S S L+ LPTGT+L F+ + PS G C+ + N ++ L+ CA SC
Sbjct: 61 GVQKTVSKTSMLVNFLPTGTLLMFEMVLPSIYRDGDCNGI-NTLMIHLLLLLCAMSCFFF 119
Query: 103 SFTDSLIGHDGKLYYGVATLRGFRPF------NFAG---TREEHGTVFKDLSRFRITALD 153
FTDS DGK+YYG T RG F F G E V D R+++T D
Sbjct: 120 HFTDSFKASDGKIYYGFVTPRGLAVFMKPPPPEFGGGDVIAEAEIPVTDD--RYKLTVND 177
Query: 154 XXXXXXXXXXXXXXXXXXXXXQTCLFPEAEADMRELLVNLPLGAGFLSSMVFMIFPTTRK 213
CLFP E +M +++ + P+ G + S +F++FPTTR
Sbjct: 178 FVHAVMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPIMVGIVCSALFLVFPTTRY 237
Query: 214 SIG 216
+G
Sbjct: 238 GVG 240
>AT1G09157.1 | chr1:2951665-2952396 REVERSE LENGTH=244
Length = 243
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 43 AVDKTLSGASDLLKLLPTGTVLAFQALAPSFSNHGVCHAVANRYLVLALIGACAASCMLL 102
V KT+S S L+ LPTGT+L F+ + P+ G C+ + N ++ L+ CA SC
Sbjct: 60 GVQKTVSKTSMLVNFLPTGTLLMFEMVLPTIYRDGDCNGI-NTLMIHLLLLLCAMSCFFF 118
Query: 103 SFTDSLIGHDGKLYYGVATLRGFRPF------NFAG--TREEHGTVFKDLSRFRITALDX 154
FTDS DGK+YYG T RG F F G E D R+++ D
Sbjct: 119 HFTDSFKASDGKIYYGFVTPRGLAVFMKPPSPGFGGGDVIAEKEIPVTD-ERYKLRVNDF 177
Query: 155 XXXXXXXXXXXXXXXXXXXXQTCLFPEAEADMRELLVNLPLGAGFLSSMVFMIFPTTRKS 214
CLFP E +M +++ + PL G + S +F++FPT+R
Sbjct: 178 VHSVMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPLMVGIVCSALFLVFPTSRYG 237
Query: 215 IG 216
+G
Sbjct: 238 VG 239
>AT3G21520.1 | chr3:7582000-7582623 FORWARD LENGTH=208
Length = 207
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 45 DKTLSGASDLLKLLPTGTVLAFQALAPSFSNHGVCHAVANRYLVLALIGACAASCMLLSF 104
+K+L+G L+KLLPTGT+ + L P +N G C + N+ + L+ C+ SC+ F
Sbjct: 24 NKSLTGLESLIKLLPTGTLFIYLLLNPVLTNDGEC-STGNKVMSSILVALCSFSCVFSCF 82
Query: 105 TDSLIGHDGKLYYGVATLRGFRPFNFAGTREEHGTVFKDLSRFRITALDXXXXXXXXXXX 164
TDS G DG +G+ T +G T E G+V DLS++++ D
Sbjct: 83 TDSFKGVDGSRKFGIVTKKGLW------TYAEPGSV--DLSKYKLRIADFVHAGFVLAVF 134
Query: 165 XXXXXXXXXXQTCLFPEAEADMRELLVNLPLGAGFLSSMVFMIFPTTRKSIGY 217
+C +P + L++ LP G S+ +F +FP+ R IGY
Sbjct: 135 GTLVLLDANTASCFYPRFRETQKTLVMALPPAVGVASATIFALFPSKRSGIGY 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,416,409
Number of extensions: 162404
Number of successful extensions: 339
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 9
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)