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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0645300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF679 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.87 (0.0854) R2 : 0.383
β1 : -0.852 (0.341) R2dD : 0.0108 R2D : -0.0804
β2 : 0.511 (0.221) R2dC : 0.00741 R2C : -0.0465
β3 : 2.82 (0.27) R2dE : 0.212 R2E : 0.142
β4 : -5.81 (1.01) R2dD*C : 0.0454 R2D*C : -0.00606
β5 : -7.12 (1.6) R2dD*E : 0.0418 R2D*E : -0.0918
γ1 : -1.63 (0.184) R2dN8 : 0.15 R2N8 : 0.181
σ : 1.58
deviance : 1133.04
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C
peak time of C : 18.2
E
wheather : humidity
threshold : 72.45
memory length : 1183
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 1.47

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1133.04 1.58 6.87 -0.852 0.511 2.82 -5.81 -7.12 -1.63 18.2 72.45 1183 15.9 1.47
1181.73 1.6 6.77 -0.0792 0.469 2.4 -5.85 -- -1.52 18.4 70.33 1231 15.8 2.32
1200.5 1.61 6.84 -0.574 0.673 2.6 -- -5.59 -1.56 21.5 70.19 1196 15.9 1.46
1228.43 1.63 6.81 -0.147 0.663 2.22 -- -- -1.58 21.6 69.33 1237 15.8 2.26
1225.35 1.63 6.85 -0.666 -- 2.69 -- -5.93 -1.56 -- 70.77 1181 15.9 1.47
1404.97 1.76 6.89 0.0382 0.274 -- -5.47 -- -2.06 18.3 -- -- -- --
1439.93 1.78 6.92 0.0784 0.824 -- -- -- -2.09 23.2 -- -- -- --
1253.92 1.65 6.8 -0.145 -- 2.26 -- -- -1.59 -- 68.98 1232 15.8 2.02
1228.3 1.63 6.8 -- 0.66 2.17 -- -- -1.6 21.6 69.19 1245 15.9 2.15
1482.37 1.8 6.9 0.0987 -- -- -- -- -2.08 -- -- -- -- --
1440.09 1.78 6.92 -- 0.825 -- -- -- -2.1 23.2 -- -- -- --
1254.25 1.65 6.8 -- -- 2.18 -- -- -1.61 -- 69 1241 15.8 2.17
1482.62 1.8 6.9 -- -- -- -- -- -2.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1171.97 humidity 70 1440 < th dose dependent rect. 16 1
2 1173.59 humidity 70 1440 < th dose dependent rect. 15 3
7 1180.41 humidity 70 1440 < th dose dependent rect. 15 18
11 1181.62 wind 3 14400 > th dose independent rect. 6 3
42 1182.79 wind 3 14400 > th dose independent rect. 8 1
45 1183.57 wind 3 14400 < th dose independent rect. 8 1
52 1184.91 wind 3 14400 < th dose independent rect. 6 1
72 1185.76 wind 3 14400 < th dose independent rect. 6 5
105 1187.15 atmosphere 1005 10 > th dose independent rect. 18 18
106 1187.35 humidity 70 1440 < th dose dependent sin 15 NA
127 1188.86 atmosphere 1005 10 > th dose independent rect. 18 16
131 1189.26 atmosphere 1005 10 > th dose independent sin 7 NA
144 1189.48 atmosphere 1005 90 > th dose independent sin 8 NA
147 1189.80 humidity 60 1440 > th dose independent rect. 15 4
149 1190.13 humidity 60 1440 > th dose independent rect. 15 18
153 1191.31 wind 3 14400 > th dose independent rect. 6 1
155 1191.52 humidity 60 1440 > th dose independent rect. 15 8
163 1191.89 humidity 60 1440 > th dose independent rect. 15 14
171 1192.28 humidity 60 1440 < th dose independent rect. 15 18
175 1192.49 humidity 60 1440 < th dose independent rect. 15 4
177 1192.56 atmosphere 1005 270 > th dose independent rect. 14 19
279 1196.43 atmosphere 1005 10 < th dose independent rect. 18 23
298 1197.09 atmosphere 1005 270 > th dose independent sin 10 NA
303 1197.71 wind 3 4320 < th dose dependent rect. 6 3
309 1198.42 atmosphere 1005 720 > th dose independent rect. 18 10
318 1199.49 humidity 60 1440 > th dose independent sin 13 NA
319 1199.56 humidity 60 1440 < th dose independent sin 13 NA
327 1200.44 atmosphere 1005 10 < th dose independent sin 5 NA
343 1201.82 temperature 20 90 > th dose dependent rect. 17 13
395 1203.83 radiation 1 720 > th dose dependent rect. 17 13
399 1203.96 atmosphere 1005 270 > th dose independent rect. 22 11
402 1204.25 humidity 70 1440 < th dose dependent rect. 6 13
415 1204.27 wind 3 4320 < th dose dependent rect. 6 1
437 1204.87 humidity 60 1440 < th dose independent rect. 16 1
475 1205.54 humidity 70 1440 < th dose dependent no NA NA
705 1207.24 atmosphere 1005 720 > th dose independent sin 13 NA
712 1207.46 atmosphere 1005 720 > th dose independent rect. 13 16
731 1207.79 temperature 20 10 > th dose dependent rect. 17 13
740 1208.11 atmosphere 1005 720 > th dose independent rect. 11 18
776 1209.27 humidity 90 4320 > th dose dependent rect. 8 1
992 1216.15 atmosphere 1005 720 > th dose independent rect. 8 20